Validity problems in clinical machine learning by indirect data labeling using consensus definitions

We demonstrate a validity problem of machine learning in the vital application area of disease diagnosis in medicine. It arises when target labels in training data are determined by an indirect measurement, and the fundamental measurements needed to determine this indirect measurement are included in the input data representation. Machine learning models trained on this data will learn nothing else but to exactly reconstruct the known target definition. Such models show perfect performance on similarly constructed test data but will fail catastrophically on real-world examples where the defining fundamental measurements are not or only incompletely available. We present a general procedure allowing identification of problematic datasets and black-box machine learning models trained on them, and exemplify our detection procedure on the task of early prediction of sepsis.

Text-to-OverpassQL: A Natural Language Interface for Complex Geodata Querying of OpenStreetMap

We present Text-to-OverpassQL, a task designed to facilitate a natural language interface for querying geodata from OpenStreetMap (OSM). The Overpass Query Language (OverpassQL) allows users to formulate complex database queries and is widely adopted in the OSM ecosystem. Generating Overpass queries from natural language input serves multiple use-cases. It enables novice users to utilize OverpassQL without prior knowledge, assists experienced users with crafting advanced queries, and enables tool-augmented large language models to access information stored in the OSM database. In order to assess the performance of current sequence generation models on this task, we propose OverpassNL, a dataset of 8,352 queries with corresponding natural language inputs. We further introduce task specific evaluation metrics and ground the evaluation of the Text-to-OverpassQL task by executing the queries against the OSM database. We establish strong baselines by finetuning sequence-to-sequence models and adapting large language models with in-context examples. The detailed evaluation reveals strengths and weaknesses of the considered learning strategies, laying the foundations for further research into the Text-to-OverpassQL task.

Improving End-to-End Speech Translation by Imitation-Based Knowledge Distillation with Synthetic Transcripts

End-to-end automatic speech translation (AST) relies on data that combines audio inputs with text translation outputs. Previous work used existing large parallel corpora of transcriptions and translations in a knowledge distillation (KD) setup to distill a neural machine translation (NMT) into an AST student model. While KD allows using larger pretrained models, the reliance of previous KD approaches on manual audio transcripts in the data pipeline restricts the applicability of this framework to AST. We present an imitation learning approach where a teacher NMT system corrects the errors of an AST student without relying on manual transcripts. We show that the NMT teacher can recover from errors in automatic transcriptions and is able to correct erroneous translations of the AST student, leading to improvements of about 4 BLEU points over the standard AST end-to-end baseline on the English-German CoVoST-2 and MuST-C datasets, respectively. Code and data are publicly available.\footnote{\url{https://github.com/HubReb/imitkd_ast/releases/tag/v1.1}}

Enhancing Supervised Learning with Contrastive Markings in Neural Machine Translation Training

Supervised learning in Neural Machine Translation (NMT) typically follows a teacher forcing paradigm where reference tokens constitute the conditioning context in the model's prediction, instead of its own previous predictions. In order to alleviate this lack of exploration in the space of translations, we present a simple extension of standard maximum likelihood estimation by a contrastive marking objective. The additional training signals are extracted automatically from reference translations by comparing the system hypothesis against the reference, and used for up/down-weighting correct/incorrect tokens. The proposed new training procedure requires one additional translation pass over the training set per epoch, and does not alter the standard inference setup. We show that training with contrastive markings yields improvements on top of supervised learning, and is especially useful when learning from postedits where contrastive markings indicate human error corrections to the original hypotheses. Code is publicly released.

VELMA: Verbalization Embodiment of LLM Agents for Vision and Language Navigation in Street View

Incremental decision making in real-world environments is one of the most challenging tasks in embodied artificial intelligence. One particularly demanding scenario is Vision and Language Navigation~(VLN) which requires visual and natural language understanding as well as spatial and temporal reasoning capabilities. The embodied agent needs to ground its understanding of navigation instructions in observations of a real-world environment like Street View. Despite the impressive results of LLMs in other research areas, it is an ongoing problem of how to best connect them with an interactive visual environment. In this work, we propose VELMA, an embodied LLM agent that uses a verbalization of the trajectory and of visual environment observations as contextual prompt for the next action. Visual information is verbalized by a pipeline that extracts landmarks from the human written navigation instructions and uses CLIP to determine their visibility in the current panorama view. We show that VELMA is able to successfully follow navigation instructions in Street View with only two in-context examples. We further finetune the LLM agent on a few thousand examples and achieve 25%-30% relative improvement in task completion over the previous state-of-the-art for two datasets.

Towards Inferential Reproducibility of Machine Learning Research

Reliability of machine learning evaluation -- the consistency of observed evaluation scores across replicated model training runs -- is affected by several sources of nondeterminism which can be regarded as measurement noise. Current tendencies to remove noise in order to enforce reproducibility of research results neglect inherent nondeterminism at the implementation level and disregard crucial interaction effects between algorithmic noise factors and data properties. This limits the scope of conclusions that can be drawn from such experiments. Instead of removing noise, we propose to incorporate several sources of variance, including their interaction with data properties, into an analysis of significance and reliability of machine learning evaluation, with the aim to draw inferences beyond particular instances of trained models. We show how to use linear mixed effects models (LMEMs) to analyze performance evaluation scores, and to conduct statistical inference with a generalized likelihood ratio test (GLRT). This allows us to incorporate arbitrary sources of noise like meta-parameter variations into statistical significance testing, and to assess performance differences conditional on data properties. Furthermore, a variance component analysis (VCA) enables the analysis of the contribution of noise sources to overall variance and the computation of a reliability coefficient by the ratio of substantial to total variance.

Make More of Your Data: Minimal Effort Data Augmentation for Automatic Speech Recognition and Translation

Data augmentation is a technique to generate new training data based on existing data. We evaluate the simple and cost-effective method of concatenating the original data examples to build new training instances. Continued training with such augmented data is able to improve off-the-shelf Transformer and Conformer models that were optimized on the original data only. We demonstrate considerable improvements on the LibriSpeech-960h test sets (WER 2.83 and 6.87 for test-clean and test-other), which carry over to models combined with shallow fusion (WER 2.55 and 6.27). Our method of continued training also leads to improvements of up to 0.9 WER on the ASR part of CoVoST-2 for four non English languages, and we observe that the gains are highly dependent on the size of the original training data. We compare different concatenation strategies and found that our method does not need speaker information to achieve its improvements. Finally, we demonstrate on two datasets that our methods also works for speech translation tasks.

JoeyS2T: Minimalistic Speech-to-Text Modeling with JoeyNMT

JoeyS2T is a JoeyNMT extension for speech-to-text tasks such as automatic speech recognition and end-to-end speech translation. It inherits the core philosophy of JoeyNMT, a minimalist NMT toolkit built on PyTorch, seeking simplicity and accessibility. JoeyS2T's workflow is self-contained, starting from data pre-processing, over model training and prediction to evaluation, and is seamlessly integrated into JoeyNMT's compact and simple code base. On top of JoeyNMT's state-of-the-art Transformer-based encoder-decoder architecture, JoeyS2T provides speech-oriented components such as convolutional layers, SpecAugment, CTC-loss, and WER evaluation. Despite its simplicity compared to prior implementations, JoeyS2T performs competitively on English speech recognition and English-to-German speech translation benchmarks. The implementation is accompanied by a walk-through tutorial and available on https://github.com/may-/joeys2t.