Shape Modeling with Spline Partitions

Shape modelling (with methods that output shapes) is a new and important task in Bayesian nonparametrics and bioinformatics. In this work, we focus on Bayesian nonparametric methods for capturing shapes by partitioning a space using curves. In related work, the classical Mondrian process is used to partition spaces recursively with axis-aligned cuts, and is widely applied in multi-dimensional and relational data. The Mondrian process outputs hyper-rectangles. Recently, the random tessellation process was introduced as a generalization of the Mondrian process, partitioning a domain with non-axis aligned cuts in an arbitrary dimensional space, and outputting polytopes. Motivated by these processes, in this work, we propose a novel parallelized Bayesian nonparametric approach to partition a domain with curves, enabling complex data-shapes to be acquired. We apply our method to HIV-1-infected human macrophage image dataset, and also simulated datasets sets to illustrate our approach. We compare to support vector machines, random forests and state-of-the-art computer vision methods such as simple linear iterative clustering super pixel image segmentation. We develop an R package that is available at \url{https://github.com/ShufeiGe/Shape-Modeling-with-Spline-Partitions}.

Random Tessellation Forests

Space partitioning methods such as random forests and the Mondrian process are powerful machine learning methods for multi-dimensional and relational data, and are based on recursively cutting a domain. The flexibility of these methods is often limited by the requirement that the cuts be axis aligned. The Ostomachion process and the self-consistent binary space partitioning-tree process were recently introduced as generalizations of the Mondrian process for space partitioning with non-axis aligned cuts in the two dimensional plane. Motivated by the need for a multi-dimensional partitioning tree with non-axis aligned cuts, we propose the Random Tessellation Process (RTP), a framework that includes the Mondrian process and the binary space partitioning-tree process as special cases. We derive a sequential Monte Carlo algorithm for inference, and provide random forest methods. Our process is self-consistent and can relax axis-aligned constraints, allowing complex inter-dimensional dependence to be captured. We present a simulation study, and analyse gene expression data of brain tissue, showing improved accuracies over other methods.