HarvestNet: A Dataset for Detecting Smallholder Farming Activity Using Harvest Piles and Remote Sensing

Small farms contribute to a large share of the productive land in developing countries. In regions such as sub-Saharan Africa, where 80% of farms are small (under 2 ha in size), the task of mapping smallholder cropland is an important part of tracking sustainability measures such as crop productivity. However, the visually diverse and nuanced appearance of small farms has limited the effectiveness of traditional approaches to cropland mapping. Here we introduce a new approach based on the detection of harvest piles characteristic of many smallholder systems throughout the world. We present HarvestNet, a dataset for mapping the presence of farms in the Ethiopian regions of Tigray and Amhara during 2020-2023, collected using expert knowledge and satellite images, totaling 7k hand-labeled images and 2k ground collected labels. We also benchmark a set of baselines including SOTA models in remote sensing with our best models having around 80% classification performance on hand labelled data and 90%, 98% accuracy on ground truth data for Tigray, Amhara respectively. We also perform a visual comparison with a widely used pre-existing coverage map and show that our model detects an extra 56,621 hectares of cropland in Tigray. We conclude that remote sensing of harvest piles can contribute to more timely and accurate cropland assessments in food insecure region.

Deep Representation Learning of Tissue Metabolome and Computed Tomography Images Annotates Non-invasive Classification and Prognosis Prediction of NSCLC

The rich chemical information from tissue metabolomics provides a powerful means to elaborate tissue physiology or tumor characteristics at cellular and tumor microenvironment levels. However, the process of obtaining such information requires invasive biopsies, is costly, and can delay clinical patient management. Conversely, computed tomography (CT) is a clinical standard of care but does not intuitively harbor histological or prognostic information. Furthermore, the ability to embed metabolome information into CT to subsequently use the learned representation for classification or prognosis has yet to be described. This study develops a deep learning-based framework -- tissue-metabolomic-radiomic-CT (TMR-CT) by combining 48 paired CT images and tumor/normal tissue metabolite intensities to generate ten image embeddings to infer metabolite-derived representation from CT alone. In clinical NSCLC settings, we ascertain whether TMR-CT achieves state-of-the-art results in solving histology classification/prognosis tasks in an unseen international CT dataset of 742 patients. TMR-CT non-invasively determines histological classes - adenocarcinoma/ squamous cell carcinoma with an F1-score=0.78 and further asserts patients' prognosis with a c-index=0.72, surpassing the performance of radiomics models and clinical features. Additionally, our work shows the potential to generate informative biology-inspired CT-led features to explore connections between hard-to-obtain tissue metabolic profiles and routine lesion-derived image data.