Infeasible Deterministic, Stochastic, and Variance-Reduction Algorithms for Optimization under Orthogonality Constraints

Orthogonality constraints naturally appear in many machine learning problems, from Principal Components Analysis to robust neural network training. They are usually solved using Riemannian optimization algorithms, which minimize the objective function while enforcing the constraint. However, enforcing the orthogonality constraint can be the most time-consuming operation in such algorithms. Recently, Ablin & Peyr\'e (2022) proposed the Landing algorithm, a method with cheap iterations that does not enforce the orthogonality constraint but is attracted towards the manifold in a smooth manner. In this article, we provide new practical and theoretical developments for the landing algorithm. First, the method is extended to the Stiefel manifold, the set of rectangular orthogonal matrices. We also consider stochastic and variance reduction algorithms when the cost function is an average of many functions. We demonstrate that all these methods have the same rate of convergence as their Riemannian counterparts that exactly enforce the constraint. Finally, our experiments demonstrate the promise of our approach to an array of machine-learning problems that involve orthogonality constraints.

A Near-Optimal Algorithm for Bilevel Empirical Risk Minimization

Bilevel optimization problems, which are problems where two optimization problems are nested, have more and more applications in machine learning. In many practical cases, the upper and the lower objectives correspond to empirical risk minimization problems and therefore have a sum structure. In this context, we propose a bilevel extension of the celebrated SARAH algorithm. We demonstrate that the algorithm requires $\mathcal{O}((n+m)^{\frac12}\varepsilon^{-1})$ gradient computations to achieve $\varepsilon$-stationarity with $n+m$ the total number of samples, which improves over all previous bilevel algorithms. Moreover, we provide a lower bound on the number of oracle calls required to get an approximate stationary point of the objective function of the bilevel problem. This lower bound is attained by our algorithm, which is therefore optimal in terms of sample complexity.

Monge, Bregman and Occam: Interpretable Optimal Transport in High-Dimensions with Feature-Sparse Maps

Optimal transport (OT) theory focuses, among all maps $T:\mathbb{R}^d\rightarrow \mathbb{R}^d$ that can morph a probability measure onto another, on those that are the ``thriftiest'', i.e. such that the averaged cost $c(x, T(x))$ between $x$ and its image $T(x)$ be as small as possible. Many computational approaches have been proposed to estimate such Monge maps when $c$ is the $\ell_2^2$ distance, e.g., using entropic maps [Pooladian'22], or neural networks [Makkuva'20, Korotin'20]. We propose a new model for transport maps, built on a family of translation invariant costs $c(x, y):=h(x-y)$, where $h:=\tfrac{1}{2}\|\cdot\|_2^2+\tau$ and $\tau$ is a regularizer. We propose a generalization of the entropic map suitable for $h$, and highlight a surprising link tying it with the Bregman centroids of the divergence $D_h$ generated by $h$, and the proximal operator of $\tau$. We show that choosing a sparsity-inducing norm for $\tau$ results in maps that apply Occam's razor to transport, in the sense that the displacement vectors $\Delta(x):= T(x)-x$ they induce are sparse, with a sparsity pattern that varies depending on $x$. We showcase the ability of our method to estimate meaningful OT maps for high-dimensional single-cell transcription data, in the $34000$-$d$ space of gene counts for cells, without using dimensionality reduction, thus retaining the ability to interpret all displacements at the gene level.

Benchopt: Reproducible, efficient and collaborative optimization benchmarks

Numerical validation is at the core of machine learning research as it allows to assess the actual impact of new methods, and to confirm the agreement between theory and practice. Yet, the rapid development of the field poses several challenges: researchers are confronted with a profusion of methods to compare, limited transparency and consensus on best practices, as well as tedious re-implementation work. As a result, validation is often very partial, which can lead to wrong conclusions that slow down the progress of research. We propose Benchopt, a collaborative framework to automate, reproduce and publish optimization benchmarks in machine learning across programming languages and hardware architectures. Benchopt simplifies benchmarking for the community by providing an off-the-shelf tool for running, sharing and extending experiments. To demonstrate its broad usability, we showcase benchmarks on three standard learning tasks: $\ell_2$-regularized logistic regression, Lasso, and ResNet18 training for image classification. These benchmarks highlight key practical findings that give a more nuanced view of the state-of-the-art for these problems, showing that for practical evaluation, the devil is in the details. We hope that Benchopt will foster collaborative work in the community hence improving the reproducibility of research findings.

Do Residual Neural Networks discretize Neural Ordinary Differential Equations?

Neural Ordinary Differential Equations (Neural ODEs) are the continuous analog of Residual Neural Networks (ResNets). We investigate whether the discrete dynamics defined by a ResNet are close to the continuous one of a Neural ODE. We first quantify the distance between the ResNet's hidden state trajectory and the solution of its corresponding Neural ODE. Our bound is tight and, on the negative side, does not go to 0 with depth N if the residual functions are not smooth with depth. On the positive side, we show that this smoothness is preserved by gradient descent for a ResNet with linear residual functions and small enough initial loss. It ensures an implicit regularization towards a limit Neural ODE at rate 1 over N, uniformly with depth and optimization time. As a byproduct of our analysis, we consider the use of a memory-free discrete adjoint method to train a ResNet by recovering the activations on the fly through a backward pass of the network, and show that this method theoretically succeeds at large depth if the residual functions are Lipschitz with the input. We then show that Heun's method, a second order ODE integration scheme, allows for better gradient estimation with the adjoint method when the residual functions are smooth with depth. We experimentally validate that our adjoint method succeeds at large depth, and that Heun method needs fewer layers to succeed. We finally use the adjoint method successfully for fine-tuning very deep ResNets without memory consumption in the residual layers.

A framework for bilevel optimization that enables stochastic and global variance reduction algorithms

Bilevel optimization, the problem of minimizing a value function which involves the arg-minimum of another function, appears in many areas of machine learning. In a large scale setting where the number of samples is huge, it is crucial to develop stochastic methods, which only use a few samples at a time to progress. However, computing the gradient of the value function involves solving a linear system, which makes it difficult to derive unbiased stochastic estimates. To overcome this problem we introduce a novel framework, in which the solution of the inner problem, the solution of the linear system, and the main variable evolve at the same time. These directions are written as a sum, making it straightforward to derive unbiased estimates. The simplicity of our approach allows us to develop global variance reduction algorithms, where the dynamics of all variables is subject to variance reduction. We demonstrate that SABA, an adaptation of the celebrated SAGA algorithm in our framework, has $O(\frac1T)$ convergence rate, and that it achieves linear convergence under Polyak-Lojasciewicz assumption. This is the first stochastic algorithm for bilevel optimization that verifies either of these properties. Numerical experiments validate the usefulness of our method.

Shared Independent Component Analysis for Multi-Subject Neuroimaging

We consider shared response modeling, a multi-view learning problem where one wants to identify common components from multiple datasets or views. We introduce Shared Independent Component Analysis (ShICA) that models each view as a linear transform of shared independent components contaminated by additive Gaussian noise. We show that this model is identifiable if the components are either non-Gaussian or have enough diversity in noise variances. We then show that in some cases multi-set canonical correlation analysis can recover the correct unmixing matrices, but that even a small amount of sampling noise makes Multiset CCA fail. To solve this problem, we propose to use joint diagonalization after Multiset CCA, leading to a new approach called ShICA-J. We show via simulations that ShICA-J leads to improved results while being very fast to fit. While ShICA-J is based on second-order statistics, we further propose to leverage non-Gaussianity of the components using a maximum-likelihood method, ShICA-ML, that is both more accurate and more costly. Further, ShICA comes with a principled method for shared components estimation. Finally, we provide empirical evidence on fMRI and MEG datasets that ShICA yields more accurate estimation of the components than alternatives.

Sinkformers: Transformers with Doubly Stochastic Attention

Attention based models such as Transformers involve pairwise interactions between data points, modeled with a learnable attention matrix. Importantly, this attention matrix is normalized with the SoftMax operator, which makes it row-wise stochastic. In this paper, we propose instead to use Sinkhorn's algorithm to make attention matrices doubly stochastic. We call the resulting model a Sinkformer. We show that the row-wise stochastic attention matrices in classical Transformers get close to doubly stochastic matrices as the number of epochs increases, justifying the use of Sinkhorn normalization as an informative prior. On the theoretical side, we show that, unlike the SoftMax operation, this normalization makes it possible to understand the iterations of self-attention modules as a discretized gradient-flow for the Wasserstein metric. We also show in the infinite number of samples limit that, when rescaling both attention matrices and depth, Sinkformers operate a heat diffusion. On the experimental side, we show that Sinkformers enhance model accuracy in vision and natural language processing tasks. In particular, on 3D shapes classification, Sinkformers lead to a significant improvement.

Kernel Stein Discrepancy Descent

Among dissimilarities between probability distributions, the Kernel Stein Discrepancy (KSD) has received much interest recently. We investigate the properties of its Wasserstein gradient flow to approximate a target probability distribution $\pi$ on $\mathbb{R}^d$, known up to a normalization constant. This leads to a straightforwardly implementable, deterministic score-based method to sample from $\pi$, named KSD Descent, which uses a set of particles to approximate $\pi$. Remarkably, owing to a tractable loss function, KSD Descent can leverage robust parameter-free optimization schemes such as L-BFGS; this contrasts with other popular particle-based schemes such as the Stein Variational Gradient Descent algorithm. We study the convergence properties of KSD Descent and demonstrate its practical relevance. However, we also highlight failure cases by showing that the algorithm can get stuck in spurious local minima.

Adaptive Multi-View ICA: Estimation of noise levels for optimal inference

We consider a multi-view learning problem known as group independent component analysis (group ICA), where the goal is to recover shared independent sources from many views. The statistical modeling of this problem requires to take noise into account. When the model includes additive noise on the observations, the likelihood is intractable. By contrast, we propose Adaptive multiView ICA (AVICA), a noisy ICA model where each view is a linear mixture of shared independent sources with additive noise on the sources. In this setting, the likelihood has a tractable expression, which enables either direct optimization of the log-likelihood using a quasi-Newton method, or generalized EM. Importantly, we consider that the noise levels are also parameters that are learned from the data. This enables sources estimation with a closed-form Minimum Mean Squared Error (MMSE) estimator which weights each view according to its relative noise level. On synthetic data, AVICA yields better sources estimates than other group ICA methods thanks to its explicit MMSE estimator. On real magnetoencephalograpy (MEG) data, we provide evidence that the decomposition is less sensitive to sampling noise and that the noise variance estimates are biologically plausible. Lastly, on functional magnetic resonance imaging (fMRI) data, AVICA exhibits best performance in transferring information across views.