MMNavAgent: Multi-Magnification WSI Navigation Agent for Clinically Consistent Whole-Slide Analysis

Recent AI navigation approaches aim to improve Whole-Slide Image (WSI) diagnosis by modeling spatial exploration and selecting diagnostically relevant regions, yet most operate at a single fixed magnification or rely on predefined magnification traversal. In clinical practice, pathologists examine slides across multiple magnifications and selectively inspect only necessary scales, dynamically integrating global and cellular evidence in a sequential manner. This mismatch prevents existing methods from modeling cross-magnification interactions and adaptive magnification selection inherent to real diagnostic workflows. To these, we propose a clinically consistent Multi-Magnification WSI Navigation Agent (MMNavAgent) that explicitly models multi magnification interaction and adaptive magnification selection. Specifically, we introduce a Cross-Magnification navigation Tool (CMT) that aggregates contextual information from adjacent magnifications to enhance discriminative representations along the navigation path. We further introduce a Magnification Selection Tool (MST) that leverages memory-driven reasoning within the agent framework to enable interactive and adaptive magnification selection, mimicking the sequential decision process of pathologists. Extensive experiments on a public dataset demonstrate improved diagnostic performance, with 1.45% gain of AUC and 2.93% gain of BACC over a non-agent baseline. Code will be public upon acceptance.

From Linear Probing to Joint-Weighted Token Hierarchy: A Foundation Model Bridging Global and Cellular Representations in Biomarker Detection

AI-based biomarkers can infer molecular features directly from hematoxylin & eosin (H&E) slides, yet most pathology foundation models (PFMs) rely on global patch-level embeddings and overlook cell-level morphology. We present a PFM model, JWTH (Joint-Weighted Token Hierarchy), which integrates large-scale self-supervised pretraining with cell-centric post-tuning and attention pooling to fuse local and global tokens. Across four tasks involving four biomarkers and eight cohorts, JWTH achieves up to 8.3% higher balanced accuracy and 1.2% average improvement over prior PFMs, advancing interpretable and robust AI-based biomarker detection in digital pathology.

Attention Pooling Enhances NCA-based Classification of Microscopy Images

Neural Cellular Automata (NCA) offer a robust and interpretable approach to image classification, making them a promising choice for microscopy image analysis. However, a performance gap remains between NCA and larger, more complex architectures. We address this challenge by integrating attention pooling with NCA to enhance feature extraction and improve classification accuracy. The attention pooling mechanism refines the focus on the most informative regions, leading to more accurate predictions. We evaluate our method on eight diverse microscopy image datasets and demonstrate that our approach significantly outperforms existing NCA methods while remaining parameter-efficient and explainable. Furthermore, we compare our method with traditional lightweight convolutional neural network and vision transformer architectures, showing improved performance while maintaining a significantly lower parameter count. Our results highlight the potential of NCA-based models an alternative for explainable image classification.

Prior-RadGraphFormer: A Prior-Knowledge-Enhanced Transformer for Generating Radiology Graphs from X-Rays

The extraction of structured clinical information from free-text radiology reports in the form of radiology graphs has been demonstrated to be a valuable approach for evaluating the clinical correctness of report-generation methods. However, the direct generation of radiology graphs from chest X-ray (CXR) images has not been attempted. To address this gap, we propose a novel approach called Prior-RadGraphFormer that utilizes a transformer model with prior knowledge in the form of a probabilistic knowledge graph (PKG) to generate radiology graphs directly from CXR images. The PKG models the statistical relationship between radiology entities, including anatomical structures and medical observations. This additional contextual information enhances the accuracy of entity and relation extraction. The generated radiology graphs can be applied to various downstream tasks, such as free-text or structured reports generation and multi-label classification of pathologies. Our approach represents a promising method for generating radiology graphs directly from CXR images, and has significant potential for improving medical image analysis and clinical decision-making.