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PyTorch Connectomics: A Scalable and Flexible Segmentation Framework for EM Connectomics


Dec 10, 2021
Zudi Lin, Donglai Wei, Jeff Lichtman, Hanspeter Pfister

* Technical report 

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NucMM Dataset: 3D Neuronal Nuclei Instance Segmentation at Sub-Cubic Millimeter Scale


Jul 13, 2021
Zudi Lin, Donglai Wei, Mariela D. Petkova, Yuelong Wu, Zergham Ahmed, Krishna Swaroop K, Silin Zou, Nils Wendt, Jonathan Boulanger-Weill, Xueying Wang, Nagaraju Dhanyasi, Ignacio Arganda-Carreras, Florian Engert, Jeff Lichtman, Hanspeter Pfister

* The two first authors contributed equally. To be published in the proceedings of MICCAI 2021 

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AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical Regions


Jul 12, 2021
Donglai Wei, Kisuk Lee, Hanyu Li, Ran Lu, J. Alexander Bae, Zequan Liu, Lifu Zhang, Márcia dos Santos, Zudi Lin, Thomas Uram, Xueying Wang, Ignacio Arganda-Carreras, Brian Matejek, Narayanan Kasthuri, Jeff Lichtman, Hanspeter Pfister

* The two first authors contributed equally. To be published in the proceedings of MICCAI 2021 

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Icon: An Interactive Approach to Train Deep Neural Networks for Segmentation of Neuronal Structures


Oct 27, 2016
Felix Gonda, Verena Kaynig, Ray Thouis, Daniel Haehn, Jeff Lichtman, Toufiq Parag, Hanspeter Pfister


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Large-Scale Automatic Reconstruction of Neuronal Processes from Electron Microscopy Images


Mar 28, 2013
Verena Kaynig, Amelio Vazquez-Reina, Seymour Knowles-Barley, Mike Roberts, Thouis R. Jones, Narayanan Kasthuri, Eric Miller, Jeff Lichtman, Hanspeter Pfister


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