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Rare Disease Identification from Clinical Notes with Ontologies and Weak Supervision

May 08, 2021
Hang Dong, Víctor Suárez-Paniagua, Huayu Zhang, Minhong Wang, Emma Whitfield, Honghan Wu

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A Systematic Review of Natural Language Processing Applied to Radiology Reports

Feb 18, 2021
Arlene Casey, Emma Davidson, Michael Poon, Hang Dong, Daniel Duma, Andreas Grivas, Claire Grover, Víctor Suárez-Paniagua, Richard Tobin, William Whiteley, Honghan Wu, Beatrice Alex

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A Knowledge Distillation Ensemble Framework for Predicting Short and Long-term Hospitalisation Outcomes from Electronic Health Records Data

Nov 18, 2020
Zina M Ibrahim, Daniel Bean, Thomas Searle, Honghan Wu, Anthony Shek, Zeljko Kraljevic, James Galloway, Sam Norton, James T Teo, Richard JB Dobson

* 12 pages 

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Explainable Automated Coding of Clinical Notes using Hierarchical Label-wise Attention Networks and Label Embedding Initialisation

Oct 30, 2020
Hang Dong, Víctor Suárez-Paniagua, William Whiteley, Honghan Wu

* Structured abstract in full text, 17 pages, 5 figures, 4 supplementary materials (3 extra pages), submitted to Journal of Biomedical Informatics 

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Modeling Rare Interactions in Time Series Data Through Qualitative Change: Application to Outcome Prediction in Intensive Care Units

Apr 03, 2020
Zina Ibrahim, Honghan Wu, Richard Dobson

* 8 pages, 3 figures. Accepted for publication in the European Conference of Artificial Intelligence (ECAI 2020) 

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Identifying physical health comorbidities in a cohort of individuals with severe mental illness: An application of SemEHR

Feb 07, 2020
Rebecca Bendayan, Honghan Wu, Zeljko Kraljevic, Robert Stewart, Tom Searle, Jaya Chaturvedi, Jayati Das-Munshi, Zina Ibrahim, Aurelie Mascio, Angus Roberts, Daniel Bean, Richard Dobson

* 4 pages, 2 tables 

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On Classifying Sepsis Heterogeneity in the ICU: Insight Using Machine Learning

Dec 03, 2019
Zina Ibrahim, Honghan Wu, Ahmed Hamoud, Lukas Stappen, Richard Dobson, Andrea Agarossi

* 3 Figures and 2 tables. Accepted for publication at the Journal of American Medical Informatics Association 

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Contextualised concept embedding for efficiently adapting natural language processing models for phenotype identification

Mar 13, 2019
Honghan Wu, Karen Hodgson, Sue Dyson, Katherine I. Morley, Zina M. Ibrahim, Ehtesham Iqbal, Robert Stewart, Richard JB Dobson, Cathie Sudlow

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Named Entity Recognition for Electronic Health Records: A Comparison of Rule-based and Machine Learning Approaches

Mar 10, 2019
Philip John Gorinski, Honghan Wu, Claire Grover, Richard Tobin, Conn Talbot, Heather Whalley, Cathie Sudlow, William Whiteley, Beatrice Alex

* 8 pages, accepted at HealTAC 2019, Cardiff, 24-25/04/2019 

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