Classifier Reconstruction Through Counterfactual-Aware Wasserstein Prototypes

Counterfactual explanations provide actionable insights by identifying minimal input changes required to achieve a desired model prediction. Beyond their interpretability benefits, counterfactuals can also be leveraged for model reconstruction, where a surrogate model is trained to replicate the behavior of a target model. In this work, we demonstrate that model reconstruction can be significantly improved by recognizing that counterfactuals, which typically lie close to the decision boundary, can serve as informative though less representative samples for both classes. This is particularly beneficial in settings with limited access to labeled data. We propose a method that integrates original data samples with counterfactuals to approximate class prototypes using the Wasserstein barycenter, thereby preserving the underlying distributional structure of each class. This approach enhances the quality of the surrogate model and mitigates the issue of decision boundary shift, which commonly arises when counterfactuals are naively treated as ordinary training instances. Empirical results across multiple datasets show that our method improves fidelity between the surrogate and target models, validating its effectiveness.

FlowTIE: Flow-based Transport of Intensity Equation for Phase Gradient Estimation from 4D-STEM Data

We introduce FlowTIE, a neural-network-based framework for phase reconstruction from 4D-Scanning Transmission Electron Microscopy (STEM) data, which integrates the Transport of Intensity Equation (TIE) with a flow-based representation of the phase gradient. This formulation allows the model to bridge data-driven learning with physics-based priors, improving robustness under dynamical scattering conditions for thick specimen. The validation on simulated datasets of crystalline materials, benchmarking to classical TIE and gradient-based optimization methods are presented. The results demonstrate that FlowTIE improves phase reconstruction accuracy, fast, and can be integrated with a thick specimen model, namely multislice method.

1LoRA: Summation Compression for Very Low-Rank Adaptation

Parameter-Efficient Fine-Tuning (PEFT) methods have transformed the approach to fine-tuning large models for downstream tasks by enabling the adjustment of significantly fewer parameters than those in the original model matrices. In this work, we study the "very low rank regime", where we fine-tune the lowest amount of parameters per linear layer for each considered PEFT method. We propose 1LoRA (Summation Low-Rank Adaptation), a compute, parameter and memory efficient fine-tuning method which uses the feature sum as fixed compression and a single trainable vector as decompression. Differently from state-of-the-art PEFT methods like LoRA, VeRA, and the recent MoRA, 1LoRA uses fewer parameters per layer, reducing the memory footprint and the computational cost. We extensively evaluate our method against state-of-the-art PEFT methods on multiple fine-tuning tasks, and show that our method not only outperforms them, but is also more parameter, memory and computationally efficient. Moreover, thanks to its memory efficiency, 1LoRA allows to fine-tune more evenly across layers, instead of focusing on specific ones (e.g. attention layers), improving performance further.

MRI Reconstruction with Regularized 3D Diffusion Model (R3DM)

Magnetic Resonance Imaging (MRI) is a powerful imaging technique widely used for visualizing structures within the human body and in other fields such as plant sciences. However, there is a demand to develop fast 3D-MRI reconstruction algorithms to show the fine structure of objects from under-sampled acquisition data, i.e., k-space data. This emphasizes the need for efficient solutions that can handle limited input while maintaining high-quality imaging. In contrast to previous methods only using 2D, we propose a 3D MRI reconstruction method that leverages a regularized 3D diffusion model combined with optimization method. By incorporating diffusion based priors, our method improves image quality, reduces noise, and enhances the overall fidelity of 3D MRI reconstructions. We conduct comprehensive experiments analysis on clinical and plant science MRI datasets. To evaluate the algorithm effectiveness for under-sampled k-space data, we also demonstrate its reconstruction performance with several undersampling patterns, as well as with in- and out-of-distribution pre-trained data. In experiments, we show that our method improves upon tested competitors.

Wigner Distribution Deconvolution Adaptation for Live Ptychography Reconstruction

We propose a modification of Wigner Distribution Deconvolution (WDD) to support live processing ptychography. Live processing allows to reconstruct and display the specimen transfer function gradually while diffraction patterns are acquired. For this purpose we reformulate WDD and apply a dimensionality reduction technique that reduces memory consumption and increases processing speed. We show numerically that this approach maintains the reconstruction quality of specimen transfer functions as well as reduces computational complexity during acquisition processes. Although we only present the reconstruction for Scanning Transmission Electron Microscopy (STEM) datasets, in general, the live processing algorithm we present in this paper can be applied to real-time ptychographic reconstruction for different fields of application.

Optimizing Sensing Matrices for Spherical Near-Field Antenna Measurements

In this article, we address the problem of reducing the number of required samples for Spherical Near-Field Antenna Measurements (SNF) by using Compressed Sensing (CS). A condition to ensure the numerical performance of sparse recovery algorithms is the design of a sensing matrix with low mutual coherence. Without fixing any part of the sampling pattern, we propose sampling points that minimize the mutual coherence of the respective sensing matrix by using augmented Lagrangian method. Numerical experiments show that the proposed sampling scheme yields a higher recovery success in terms of phase transition diagram when compared to other known sampling patterns, such as the spiral and Hammersley sampling schemes. Furthermore, we also demonstrate that the application of CS with an optimized sensing matrix requires fewer samples than classical approaches to reconstruct the Spherical Mode Coefficients (SMCs) and far-field pattern.