This paper investigates a six-dimensional movable antenna (6DMA)-aided cell-free multi-user multiple-input multiple-output (MIMO) communication system. In this system, each distributed access point (AP) can flexibly adjust its array orientation and antenna positions to adapt to spatial channel variations and enhance communication performance. However, frequent antenna movements and centralized beamforming based on global instantaneous channel state information (CSI) sharing among APs entail extremely high signal processing delay and system overhead, which is difficult to be practically implemented in high-mobility scenarios with short channel coherence time. To address these practical implementation challenges and improve scalability, a two-timescale decentralized optimization framework is proposed in this paper to jointly design the beamformer, antenna positions, and array orientations. In the short timescale, each AP updates its receive beamformer based on local instantaneous CSI and global statistical CSI. In the long timescale, the central processing unit optimizes the antenna positions and array orientations at all APs based on global statistical CSI to maximize the ergodic sum rate of all users. The resulting optimization problem is non-convex and involves highly coupled variables, thus posing significant challenges for obtaining efficient solutions. To address this problem, a constrained stochastic successive convex approximation algorithm is developed. Numerical results demonstrate that the proposed 6DMA-aided cell-free system with decentralized beamforming significantly outperforms other antenna movement schemes with less flexibility and even achieves a performance comparable to that of the centralized beamforming benchmark.