Context Pooling: Query-specific Graph Pooling for Generic Inductive Link Prediction in Knowledge Graphs

Recent investigations on the effectiveness of Graph Neural Network (GNN)-based models for link prediction in Knowledge Graphs (KGs) show that vanilla aggregation does not significantly impact the model performance. In this paper, we introduce a novel method, named Context Pooling, to enhance GNN-based models' efficacy for link predictions in KGs. To our best of knowledge, Context Pooling is the first methodology that applies graph pooling in KGs. Additionally, Context Pooling is first-of-its-kind to enable the generation of query-specific graphs for inductive settings, where testing entities are unseen during training. Specifically, we devise two metrics, namely neighborhood precision and neighborhood recall, to assess the neighbors' logical relevance regarding the given queries, thereby enabling the subsequent comprehensive identification of only the logically relevant neighbors for link prediction. Our method is generic and assessed by being applied to two state-of-the-art (SOTA) models on three public transductive and inductive datasets, achieving SOTA performance in 42 out of 48 settings.

Enabling Patient-side Disease Prediction via the Integration of Patient Narratives

Disease prediction holds considerable significance in modern healthcare, because of its crucial role in facilitating early intervention and implementing effective prevention measures. However, most recent disease prediction approaches heavily rely on laboratory test outcomes (e.g., blood tests and medical imaging from X-rays). Gaining access to such data for precise disease prediction is often a complex task from the standpoint of a patient and is always only available post-patient consultation. To make disease prediction available from patient-side, we propose Personalized Medical Disease Prediction (PoMP), which predicts diseases using patient health narratives including textual descriptions and demographic information. By applying PoMP, patients can gain a clearer comprehension of their conditions, empowering them to directly seek appropriate medical specialists and thereby reducing the time spent navigating healthcare communication to locate suitable doctors. We conducted extensive experiments using real-world data from Haodf to showcase the effectiveness of PoMP.

Anchoring Path for Inductive Relation Prediction in Knowledge Graphs

Aiming to accurately predict missing edges representing relations between entities, which are pervasive in real-world Knowledge Graphs (KGs), relation prediction plays a critical role in enhancing the comprehensiveness and utility of KGs. Recent research focuses on path-based methods due to their inductive and explainable properties. However, these methods face a great challenge when lots of reasoning paths do not form Closed Paths (CPs) in the KG. To address this challenge, we propose Anchoring Path Sentence Transformer (APST) by introducing Anchoring Paths (APs) to alleviate the reliance of CPs. Specifically, we develop a search-based description retrieval method to enrich entity descriptions and an assessment mechanism to evaluate the rationality of APs. APST takes both APs and CPs as the inputs of a unified Sentence Transformer architecture, enabling comprehensive predictions and high-quality explanations. We evaluate APST on three public datasets and achieve state-of-the-art (SOTA) performance in 30 of 36 transductive, inductive, and few-shot experimental settings.

Multi-Aspect Explainable Inductive Relation Prediction by Sentence Transformer

Recent studies on knowledge graphs (KGs) show that path-based methods empowered by pre-trained language models perform well in the provision of inductive and explainable relation predictions. In this paper, we introduce the concepts of relation path coverage and relation path confidence to filter out unreliable paths prior to model training to elevate the model performance. Moreover, we propose Knowledge Reasoning Sentence Transformer (KRST) to predict inductive relations in KGs. KRST is designed to encode the extracted reliable paths in KGs, allowing us to properly cluster paths and provide multi-aspect explanations. We conduct extensive experiments on three real-world datasets. The experimental results show that compared to SOTA models, KRST achieves the best performance in most transductive and inductive test cases (4 of 6), and in 11 of 12 few-shot test cases.