Enhancing LLM Metacognition via Cognitive Pairwise Training

Reinforcement learning with verifiable rewards (RLVR) has become central to LLM reasoning, but its outcome-level rewards can make models more willing to give confident answers when evidence or reasoning is unreliable. Existing SFT or RL methods mainly teach LLMs to refuse or express uncertainty at the response level, which can overfit abstention behavior rather than improve reasoning reliability. To address this limitation, we propose Cognitive Pairwise Training (CPT), a cognitive mid-training alignment stage that turns pairwise comparisons over reasoning traces into a reusable alignment signal. By learning to distinguish trustworthy from flawed reasoning, CPT encourages the model to internalize a reasoning-quality discrimination boundary rather than memorize surface refusal patterns. Across five model scales and three model families, CPT improves the reasoning--metacognition trade-off. At 14B, CPT+RL outperforms the standard SFT+RL pipeline by +2.2 math-average points and +5.2 abstention-F1 points. Further analyses show that CPT improves trace quality and exhibits strong robustness and scalability across evaluation and training settings. Code and models are released at https://github.com/Tsinghua-dhy/CPT.

AI Mathematician as a Partner in Advancing Mathematical Discovery -- A Case Study in Homogenization Theory

Artificial intelligence (AI) has demonstrated impressive progress in mathematical reasoning, yet its integration into the practice of mathematical research remains limited. In this study, we investigate how the AI Mathematician (AIM) system can operate as a research partner rather than a mere problem solver. Focusing on a challenging problem in homogenization theory, we analyze the autonomous reasoning trajectories of AIM and incorporate targeted human interventions to structure the discovery process. Through iterative decomposition of the problem into tractable subgoals, selection of appropriate analytical methods, and validation of intermediate results, we reveal how human intuition and machine computation can complement one another. This collaborative paradigm enhances the reliability, transparency, and interpretability of the resulting proofs, while retaining human oversight for formal rigor and correctness. The approach leads to a complete and verifiable proof, and more broadly, demonstrates how systematic human-AI co-reasoning can advance the frontier of mathematical discovery.

AI Mathematician: Towards Fully Automated Frontier Mathematical Research

Large Reasoning Models (LRMs) have made significant progress in mathematical capabilities in recent times. However, these successes have been primarily confined to competition-level problems. In this work, we propose AI Mathematician (AIM) framework, which harnesses the reasoning strength of LRMs to support frontier mathematical research. We have identified two critical challenges of mathematical research compared to competition, {\it the intrinsic complexity of research problems} and {\it the requirement of procedural rigor}. To address these challenges, AIM incorporates two core strategies: an exploration mechanism to foster longer solution paths, and the pessimistic reasonable verification method to ensure reliability. This early version of AIM already exhibits strong capability in tackling research-level tasks. We conducted extensive experiments across several real-world mathematical topics and obtained promising results. AIM is able to autonomously construct substantial portions of proofs and uncover non-trivial insights within each research area. These findings highlight the potential of LRMs in mathematical discovery and suggest that LRM-based agent systems could significantly accelerate mathematical research in the future.

Variational and Explanatory Neural Networks for Encoding Cancer Profiles and Predicting Drug Responses

Human cancers present a significant public health challenge and require the discovery of novel drugs through translational research. Transcriptomics profiling data that describes molecular activities in tumors and cancer cell lines are widely utilized for predicting anti-cancer drug responses. However, existing AI models face challenges due to noise in transcriptomics data and lack of biological interpretability. To overcome these limitations, we introduce VETE (Variational and Explanatory Transcriptomics Encoder), a novel neural network framework that incorporates a variational component to mitigate noise effects and integrates traceable gene ontology into the neural network architecture for encoding cancer transcriptomics data. Key innovations include a local interpretability-guided method for identifying ontology paths, a visualization tool to elucidate biological mechanisms of drug responses, and the application of centralized large scale hyperparameter optimization. VETE demonstrated robust accuracy in cancer cell line classification and drug response prediction. Additionally, it provided traceable biological explanations for both tasks and offers insights into the mechanisms underlying its predictions. VETE bridges the gap between AI-driven predictions and biologically meaningful insights in cancer research, which represents a promising advancement in the field.