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A Scoping Review of Publicly Available Language Tasks in Clinical Natural Language Processing

Dec 07, 2021
Yanjun Gao, Dmitriy Dligach, Leslie Christensen, Samuel Tesch, Ryan Laffin, Dongfang Xu, Timothy Miller, Ozlem Uzuner, Matthew M Churpek, Majid Afshar

* Paper submitted to Journal of American Medical Informatics Association (JAMIA) 

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BCH-NLP at BioCreative VII Track 3: medications detection in tweets using transformer networks and multi-task learning

Nov 26, 2021
Dongfang Xu, Shan Chen, Timothy Miller

* Proceedings of the seventh BioCreative challenge evaluation workshop (

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Classifying Long Clinical Documents with Pre-trained Transformers

May 14, 2021
Xin Su, Timothy Miller, Xiyu Ding, Majid Afshar, Dmitriy Dligach

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Deep Representation Learning of Patient Data from Electronic Health Records (EHR): A Systematic Review

Oct 06, 2020
Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy Miller, Fei Wang, W. Jim Zheng, Kirk Roberts

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Two-stage Federated Phenotyping and Patient Representation Learning

Aug 14, 2019
Dianbo Liu, Dmitriy Dligach, Timothy Miller

* 9 pages; Proceedings of the 18th BioNLP Workshop and Shared Task 

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FADL:Federated-Autonomous Deep Learning for Distributed Electronic Health Record

Dec 03, 2018
Dianbo Liu, Timothy Miller, Raheel Sayeed, Kenneth D. Mandl

* Machine Learning for Health (ML4H) Workshop at NeurIPS 2018 
* Machine Learning for Health (ML4H) Workshop at NeurIPS 2018 arXiv:cs/0101200 

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Depth-bounding is effective: Improvements and evaluation of unsupervised PCFG induction

Sep 10, 2018
Lifeng Jin, Finale Doshi-Velez, Timothy Miller, William Schuler, Lane Schwartz

* EMNLP 2018 

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Learning Patient Representations from Text

May 05, 2018
Dmitriy Dligach, Timothy Miller

* Accepted to *SEM 2018 

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Unsupervised Grammar Induction with Depth-bounded PCFG

Feb 26, 2018
Lifeng Jin, Finale Doshi-Velez, Timothy Miller, William Schuler, Lane Schwartz

* Accepted by Transactions of the Association for Computational Linguistics 

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