MLLMs Get It Right, Then Get It Wrong: Tracing and Correcting Late-Layer Textual Bias

When vision contradicts text, multimodal large language models (MLLMs) consistently favor text, even when images provide clear evidence otherwise. This bias poses risks for applications requiring visual grounding, yet its cause remains unclear. In this paper, we uncover a surprising finding: models often get it right initially, forming correct vision-based predictions in their intermediate layers, before changing their minds and favoring text in the final output. We call this "late-layer textual override". The visual information is encoded, it simply does not survive to the output. More intriguingly, we find that how predictions change reveals whether they're correct: 85% of failures shift toward text, while 89% of successes shift toward vision. This directional signature enables a simple but powerful intervention: when we detect a confident visual prediction being suppressed, we restore it. We propose CALRD (Conflict-Aware Layer Reference Decoding), a training-free method that recovers overridden predictions at inference time. Experiments across five MLLMs of varying architectures demonstrate up to 9.4% absolute improvements on conflict benchmarks while largely preserving standard performance, without training or external knowledge. It recovers what the model already knew but failed to preserve.

StemBind: When MLLMs Get Lost Between Rules and Instances in Abstract Visual Reasoning

Multimodal large language models (MLLMs) often know the rule but pick the wrong answer: on abstract visual reasoning (AVR) tasks, a model can describe what it sees and name the underlying pattern, yet still fail to choose the matching candidate. Existing AVR benchmarks cannot detect this because they collapse perception, rule induction, and answer selection into a single right-or-wrong signal. We introduce StemBind, a shared-stem diagnostic benchmark that probes the same visual stem with three aligned questions: Perception (what is in the image), Rule (what pattern governs it), and Full (which option completes it), so a final-answer error can be attributed to a specific sub-step on the same evidence. StemBind contains 2,298 curated knowledge-light stems across nine auditable visual operations, totaling 19,533 P/R/F tasks, with each full item annotated by Sternberg's four reasoning stages (S1 Encode, S2 Infer, S3 Map, S4 Apply). Evaluating 24 frontier MLLM configurations yields four findings. (i) The R-F chasm: rule accuracy exceeds full-item accuracy on 22 of 24 models, so most failures happen after the rule is identified. (ii) A persistent binding gap: even when P and R are both correct on the same stem, models still answer F incorrectly 51.2% of the time. (iii) The bottleneck is S3: process diagnostics and Stage-wise Stimulus Augmentation localize the dominant failure to rule-to-instance mapping. (iv) Scaling and thinking do not help: neither larger models nor explicit thinking mode reliably closes the gap, and thinking even lowers rule and full-item accuracy. StemBind reframes AVR evaluation from final-answer ranking to locating where abstract visual reasoning breaks down, identifying rule-to-instance binding as a concrete next target for vision-grounded reasoning.

Advantage Collapse in Group Relative Policy Optimization: Diagnosis and Mitigation

Group Relative Policy Optimization (GRPO), a prominent algorithm within the Reinforcement Learning from Verifiable Rewards (RLVR) framework, has achieved strong results in improving the reasoning capabilities of large language models (LLMs). However, GRPO is prone to advantage collapse, a failure mode where homogeneous rewards within a group (e.g., all correct or all incorrect answers) yield near-zero advantages and vanishing gradients. To address this, we introduce the Advantage Collapse Rate (ACR), the first diagnostic metric quantifying the proportion of training batches with ineffective gradients. Across models from 0.5B to 14B parameters on mathematical reasoning benchmarks, we show that ACR strongly predicts training stagnation and final performance. We then propose Adaptive Virtual Sample Policy Optimization (AVSPO), a lightweight extension of GRPO that injects virtual reward samples, guided by real-time ACR monitoring, to enable learning from homogeneous groups without additional model rollouts. AVSPO reduces advantage collapse by 58-63% relative to GRPO and yields consistent accuracy gains of 4-6 percentage points across all model scales, while maintaining generalization on the evaluated out-of-domain task. Code and datasets are available at https://qingyonghu.github.io/AVSPO.

AiraXiv: An AI-Driven Open-Access Platform for Human and AI Scientists

Recent advances in artificial intelligence (AI) have accelerated the growth of both human-authored and AI-generated research outputs, placing increasing strain on traditional academic publishing systems and challenging the scalability of conference- and journal-centered paradigms amid rising submission volumes, reviewer workload, and venue size. To address these challenges, we explore an AI-era publishing paradigm in which both human and AI scientists participate as authors and readers, and papers evolve through continuous, feedback-driven iteration. We propose AiraXiv, an AI-driven open-access platform built on open preprints, AI-augmented analysis and review, and reader feedback. AiraXiv supports human scientists through an interactive UI and AI scientists through Model Context Protocol (MCP)-based interactions. We validate AiraXiv through real-world deployments, including serving as the submission platform for ICAIS 2025, demonstrating its potential as a fast, inclusive, and scalable research infrastructure for the AI era. AiraXiv is publicly available at https://airaxiv.com.

ENC-Bench: A Benchmark for Evaluating Multimodal Large Language Models in Electronic Navigational Chart Understanding

Electronic Navigational Charts (ENCs) are the safety-critical backbone of modern maritime navigation, yet it remains unclear whether multimodal large language models (MLLMs) can reliably interpret them. Unlike natural images or conventional charts, ENCs encode regulations, bathymetry, and route constraints via standardized vector symbols, scale-dependent rendering, and precise geometric structure -- requiring specialized maritime expertise for interpretation. We introduce ENC-Bench, the first benchmark dedicated to professional ENC understanding. ENC-Bench contains 20,490 expert-validated samples from 840 authentic National Oceanic and Atmospheric Administration (NOAA) ENCs, organized into a three-level hierarchy: Perception (symbol and feature recognition), Spatial Reasoning (coordinate localization, bearing, distance), and Maritime Decision-Making (route legality, safety assessment, emergency planning under multiple constraints). All samples are generated from raw S-57 data through a calibrated vector-to-image pipeline with automated consistency checks and expert review. We evaluate 10 state-of-the-art MLLMs such as GPT-4o, Gemini 2.5, Qwen3-VL, InternVL-3, and GLM-4.5V, under a unified zero-shot protocol. The best model achieves only 47.88% accuracy, with systematic challenges in symbolic grounding, spatial computation, multi-constraint reasoning, and robustness to lighting and scale variations. By establishing the first rigorous ENC benchmark, we open a new research frontier at the intersection of specialized symbolic reasoning and safety-critical AI, providing essential infrastructure for advancing MLLMs toward professional maritime applications.

Efficient Hallucination Detection: Adaptive Bayesian Estimation of Semantic Entropy with Guided Semantic Exploration

Large language models (LLMs) have achieved remarkable success in various natural language processing tasks, yet they remain prone to generating factually incorrect outputs known as hallucinations. While recent approaches have shown promise for hallucination detection by repeatedly sampling from LLMs and quantifying the semantic inconsistency among the generated responses, they rely on fixed sampling budgets that fail to adapt to query complexity, resulting in computational inefficiency. We propose an Adaptive Bayesian Estimation framework for Semantic Entropy with Guided Semantic Exploration, which dynamically adjusts sampling requirements based on observed uncertainty. Our approach employs a hierarchical Bayesian framework to model the semantic distribution, enabling dynamic control of sampling iterations through variance-based thresholds that terminate generation once sufficient certainty is achieved. We also develop a perturbation-based importance sampling strategy to systematically explore the semantic space. Extensive experiments on four QA datasets demonstrate that our method achieves superior hallucination detection performance with significant efficiency gains. In low-budget scenarios, our approach requires about 50% fewer samples to achieve comparable detection performance to existing methods, while delivers an average AUROC improvement of 12.6% under the same sampling budget.

AutoFigure: Generating and Refining Publication-Ready Scientific Illustrations

High-quality scientific illustrations are crucial for effectively communicating complex scientific and technical concepts, yet their manual creation remains a well-recognized bottleneck in both academia and industry. We present FigureBench, the first large-scale benchmark for generating scientific illustrations from long-form scientific texts. It contains 3,300 high-quality scientific text-figure pairs, covering diverse text-to-illustration tasks from scientific papers, surveys, blogs, and textbooks. Moreover, we propose AutoFigure, the first agentic framework that automatically generates high-quality scientific illustrations based on long-form scientific text. Specifically, before rendering the final result, AutoFigure engages in extensive thinking, recombination, and validation to produce a layout that is both structurally sound and aesthetically refined, outputting a scientific illustration that achieves both structural completeness and aesthetic appeal. Leveraging the high-quality data from FigureBench, we conduct extensive experiments to test the performance of AutoFigure against various baseline methods. The results demonstrate that AutoFigure consistently surpasses all baseline methods, producing publication-ready scientific illustrations. The code, dataset and huggingface space are released in https://github.com/ResearAI/AutoFigure.

MCP-RiskCue: Can LLM Infer Risk Information From MCP Server System Logs?

Large language models (LLMs) demonstrate strong capabilities in solving complex tasks when integrated with external tools. The Model Context Protocol (MCP) has become a standard interface for enabling such tool-based interactions. However, these interactions introduce substantial security concerns, particularly when the MCP server is compromised or untrustworthy. While prior benchmarks primarily focus on prompt injection attacks or analyze the vulnerabilities of LLM MCP interaction trajectories, limited attention has been given to the underlying system logs associated with malicious MCP servers. To address this gap, we present the first synthetic benchmark for evaluating LLMs ability to identify security risks from system logs. We define nine categories of MCP server risks and generate 1,800 synthetic system logs using ten state-of-the-art LLMs. These logs are embedded in the return values of 243 curated MCP servers, yielding a dataset of 2,421 chat histories for training and 471 queries for evaluation. Our pilot experiments reveal that smaller models often fail to detect risky system logs, leading to high false negatives. While models trained with supervised fine-tuning (SFT) tend to over-flag benign logs, resulting in elevated false positives, Reinforcement Learning from Verifiable Reward (RLVR) offers a better precision-recall balance. In particular, after training with Group Relative Policy Optimization (GRPO), Llama3.1-8B-Instruct achieves 83% accuracy, surpassing the best-performing large remote model by 9 percentage points. Fine-grained, per-category analysis further underscores the effectiveness of reinforcement learning in enhancing LLM safety within the MCP framework. Code and data are available at: https://github.com/PorUna-byte/MCP-RiskCue

DeepScientist: Advancing Frontier-Pushing Scientific Findings Progressively

While previous AI Scientist systems can generate novel findings, they often lack the focus to produce scientifically valuable contributions that address pressing human-defined challenges. We introduce DeepScientist, a system designed to overcome this by conducting goal-oriented, fully autonomous scientific discovery over month-long timelines. It formalizes discovery as a Bayesian Optimization problem, operationalized through a hierarchical evaluation process consisting of "hypothesize, verify, and analyze". Leveraging a cumulative Findings Memory, this loop intelligently balances the exploration of novel hypotheses with exploitation, selectively promoting the most promising findings to higher-fidelity levels of validation. Consuming over 20,000 GPU hours, the system generated about 5,000 unique scientific ideas and experimentally validated approximately 1100 of them, ultimately surpassing human-designed state-of-the-art (SOTA) methods on three frontier AI tasks by 183.7\%, 1.9\%, and 7.9\%. This work provides the first large-scale evidence of an AI achieving discoveries that progressively surpass human SOTA on scientific tasks, producing valuable findings that genuinely push the frontier of scientific discovery. To facilitate further research into this process, we will open-source all experimental logs and system code at https://github.com/ResearAI/DeepScientist/.

RAG-MCP: Mitigating Prompt Bloat in LLM Tool Selection via Retrieval-Augmented Generation

Large language models (LLMs) struggle to effectively utilize a growing number of external tools, such as those defined by the Model Context Protocol (MCP)\cite{IntroducingMCP}, due to prompt bloat and selection complexity. We introduce RAG-MCP, a Retrieval-Augmented Generation framework that overcomes this challenge by offloading tool discovery. RAG-MCP uses semantic retrieval to identify the most relevant MCP(s) for a given query from an external index before engaging the LLM. Only the selected tool descriptions are passed to the model, drastically reducing prompt size and simplifying decision-making. Experiments, including an MCP stress test, demonstrate RAG-MCP significantly cuts prompt tokens (e.g., by over 50%) and more than triples tool selection accuracy (43.13% vs 13.62% baseline) on benchmark tasks. RAG-MCP enables scalable and accurate tool integration for LLMs.