AvaTaR: Optimizing LLM Agents for Tool-Assisted Knowledge Retrieval

Large language model (LLM) agents have demonstrated impressive capability in utilizing external tools and knowledge to boost accuracy and reduce hallucinations. However, developing the prompting techniques that make LLM agents able to effectively use external tools and knowledge is a heuristic and laborious task. Here, we introduce AvaTaR, a novel and automatic framework that optimizes an LLM agent to effectively use the provided tools and improve its performance on a given task/domain. During optimization, we design a comparator module to iteratively provide insightful and holistic prompts to the LLM agent via reasoning between positive and negative examples sampled from training data. We demonstrate AvaTaR on four complex multimodal retrieval datasets featuring textual, visual, and relational information. We find AvaTaR consistently outperforms state-of-the-art approaches across all four challenging tasks and exhibits strong generalization ability when applied to novel cases, achieving an average relative improvement of 14% on the Hit@1 metric. Code and dataset are available at https://github.com/zou-group/avatar.

BioDiscoveryAgent: An AI Agent for Designing Genetic Perturbation Experiments

Agents based on large language models have shown great potential in accelerating scientific discovery by leveraging their rich background knowledge and reasoning capabilities. Here, we develop BioDiscoveryAgent, an agent that designs new experiments, reasons about their outcomes, and efficiently navigates the hypothesis space to reach desired solutions. We demonstrate our agent on the problem of designing genetic perturbation experiments, where the aim is to find a small subset out of many possible genes that, when perturbed, result in a specific phenotype (e.g., cell growth). Utilizing its biological knowledge, BioDiscoveryAgent can uniquely design new experiments without the need to train a machine learning model or explicitly design an acquisition function. Moreover, BioDiscoveryAgent achieves an average of 18% improvement in detecting desired phenotypes across five datasets, compared to existing Bayesian optimization baselines specifically trained for this task. Our evaluation includes one dataset that is unpublished, ensuring it is not part of the language model's training data. Additionally, BioDiscoveryAgent predicts gene combinations to perturb twice as accurately as a random baseline, a task so far not explored in the context of closed-loop experiment design. The agent also has access to tools for searching the biomedical literature, executing code to analyze biological datasets, and prompting another agent to critically evaluate its predictions. Overall, BioDiscoveryAgent is interpretable at every stage, representing an accessible new paradigm in the computational design of biological experiments with the potential to augment scientists' capabilities.

STaRK: Benchmarking LLM Retrieval on Textual and Relational Knowledge Bases

Answering real-world user queries, such as product search, often requires accurate retrieval of information from semi-structured knowledge bases or databases that involve blend of unstructured (e.g., textual descriptions of products) and structured (e.g., entity relations of products) information. However, previous works have mostly studied textual and relational retrieval tasks as separate topics. To address the gap, we develop STARK, a large-scale Semi-structure retrieval benchmark on Textual and Relational Knowledge Bases. We design a novel pipeline to synthesize natural and realistic user queries that integrate diverse relational information and complex textual properties, as well as their ground-truth answers. Moreover, we rigorously conduct human evaluation to validate the quality of our benchmark, which covers a variety of practical applications, including product recommendations, academic paper searches, and precision medicine inquiries. Our benchmark serves as a comprehensive testbed for evaluating the performance of retrieval systems, with an emphasis on retrieval approaches driven by large language models (LLMs). Our experiments suggest that the STARK datasets present significant challenges to the current retrieval and LLM systems, indicating the demand for building more capable retrieval systems that can handle both textual and relational aspects.

An Improved Artificial Fish Swarm Algorithm for Solving the Problem of Investigation Path Planning

Informationization is a prevailing trend in today's world. The increasing demand for information in decision-making processes poses significant challenges for investigation activities, particularly in terms of effectively allocating limited resources to plan investigation programs. This paper addresses the investigation path planning problem by formulating it as a multi-traveling salesman problem (MTSP). Our objective is to minimize costs, and to achieve this, we propose a chaotic artificial fish swarm algorithm based on multiple population differential evolution (DE-CAFSA). To overcome the limitations of the artificial fish swarm algorithm, such as low optimization accuracy and the inability to consider global and local information, we incorporate adaptive field of view and step size adjustments, replace random behavior with the 2-opt operation, and introduce chaos theory and sub-optimal solutions to enhance optimization accuracy and search performance. Additionally, we integrate the differential evolution algorithm to create a hybrid algorithm that leverages the complementary advantages of both approaches. Experimental results demonstrate that DE-CAFSA outperforms other algorithms on various public datasets of different sizes, as well as showcasing excellent performance on the examples proposed in this study.

Multiscale Motion-Aware and Spatial-Temporal-Channel Contextual Coding Network for Learned Video Compression

Recently, learned video compression has achieved exciting performance. Following the traditional hybrid prediction coding framework, most learned methods generally adopt the motion estimation motion compensation (MEMC) method to remove inter-frame redundancy. However, inaccurate motion vector (MV) usually lead to the distortion of reconstructed frame. In addition, most approaches ignore the spatial and channel redundancy. To solve above problems, we propose a motion-aware and spatial-temporal-channel contextual coding based video compression network (MASTC-VC), which learns the latent representation and uses variational autoencoders (VAEs) to capture the characteristics of intra-frame pixels and inter-frame motion. Specifically, we design a multiscale motion-aware module (MS-MAM) to estimate spatial-temporal-channel consistent motion vector by utilizing the multiscale motion prediction information in a coarse-to-fine way. On the top of it, we further propose a spatial-temporal-channel contextual module (STCCM), which explores the correlation of latent representation to reduce the bit consumption from spatial, temporal and channel aspects respectively. Comprehensive experiments show that our proposed MASTC-VC is surprior to previous state-of-the-art (SOTA) methods on three public benchmark datasets. More specifically, our method brings average 10.15\% BD-rate savings against H.265/HEVC (HM-16.20) in PSNR metric and average 23.93\% BD-rate savings against H.266/VVC (VTM-13.2) in MS-SSIM metric.

Benchmarking Large Language Models As AI Research Agents

Scientific experimentation involves an iterative process of creating hypotheses, designing experiments, running experiments, and analyzing the results. Can we build AI research agents to perform these long-horizon tasks? To take a step towards building and evaluating research agents on such open-ended decision-making tasks, we focus on the problem of machine learning engineering: given a task description and a dataset, build a high-performing model. In this paper, we propose MLAgentBench, a suite of ML tasks for benchmarking AI research agents. Agents can perform actions like reading/writing files, executing code, and inspecting outputs. With these actions, agents could run experiments, analyze the results, and modify the code of entire machine learning pipelines, such as data processing, architecture, training processes, etc. The benchmark then automatically evaluates the agent's performance objectively over various metrics related to performance and efficiency. We also design an LLM-based research agent to automatically perform experimentation loops in such an environment. Empirically, we find that a GPT-4-based research agent can feasibly build compelling ML models over many tasks in MLAgentBench, displaying highly interpretable plans and actions. However, the success rates vary considerably; they span from almost 90\% on well-established older datasets to as low as 10\% on recent Kaggle Challenges -- unavailable during the LLM model's pretraining -- and even 0\% on newer research challenges like BabyLM. Finally, we identify several key challenges for LLM-based research agents such as long-term planning and hallucination. Our code is released at https://github.com/snap-stanford/MLAgentBench.

DD-GCN: Directed Diffusion Graph Convolutional Network for Skeleton-based Human Action Recognition

Graph Convolutional Networks (GCNs) have been widely used in skeleton-based human action recognition. In GCN-based methods, the spatio-temporal graph is fundamental for capturing motion patterns. However, existing approaches ignore the physical dependency and synchronized spatio-temporal correlations between joints, which limits the representation capability of GCNs. To solve these problems, we construct the directed diffusion graph for action modeling and introduce the activity partition strategy to optimize the weight sharing mechanism of graph convolution kernels. In addition, we present the spatio-temporal synchronization encoder to embed synchronized spatio-temporal semantics. Finally, we propose Directed Diffusion Graph Convolutional Network (DD-GCN) for action recognition, and the experiments on three public datasets: NTU-RGB+D, NTU-RGB+D 120, and NW-UCLA, demonstrate the state-of-the-art performance of our method.

Enhancing Nucleus Segmentation with HARU-Net: A Hybrid Attention Based Residual U-Blocks Network

Nucleus image segmentation is a crucial step in the analysis, pathological diagnosis, and classification, which heavily relies on the quality of nucleus segmentation. However, the complexity of issues such as variations in nucleus size, blurred nucleus contours, uneven staining, cell clustering, and overlapping cells poses significant challenges. Current methods for nucleus segmentation primarily rely on nuclear morphology or contour-based approaches. Nuclear morphology-based methods exhibit limited generalization ability and struggle to effectively predict irregular-shaped nuclei, while contour-based extraction methods face challenges in accurately segmenting overlapping nuclei. To address the aforementioned issues, we propose a dual-branch network using hybrid attention based residual U-blocks for nucleus instance segmentation. The network simultaneously predicts target information and target contours. Additionally, we introduce a post-processing method that combines the target information and target contours to distinguish overlapping nuclei and generate an instance segmentation image. Within the network, we propose a context fusion block (CF-block) that effectively extracts and merges contextual information from the network. Extensive quantitative evaluations are conducted to assess the performance of our method. Experimental results demonstrate the superior performance of the proposed method compared to state-of-the-art approaches on the BNS, MoNuSeg, CoNSeg, and CPM-17 datasets.

A Voting-Stacking Ensemble of Inception Networks for Cervical Cytology Classification

Cervical cancer is one of the most severe diseases threatening women's health. Early detection and diagnosis can significantly reduce cancer risk, in which cervical cytology classification is indispensable. Researchers have recently designed many networks for automated cervical cancer diagnosis, but the limited accuracy and bulky size of these individual models cannot meet practical application needs. To address this issue, we propose a Voting-Stacking ensemble strategy, which employs three Inception networks as base learners and integrates their outputs through a voting ensemble. The samples misclassified by the ensemble model generate a new training set on which a linear classification model is trained as the meta-learner and performs the final predictions. In addition, a multi-level Stacking ensemble framework is designed to improve performance further. The method is evaluated on the SIPakMed, Herlev, and Mendeley datasets, achieving accuracies of 100%, 100%, and 100%, respectively. The experimental results outperform the current state-of-the-art (SOTA) methods, demonstrating its potential for reducing screening workload and helping pathologists detect cervical cancer.

Rethinking Collaborative Perception from the Spatial-Temporal Importance of Semantic Information

Collaboration by the sharing of semantic information is crucial to enable the enhancement of perception capabilities. However, existing collaborative perception methods tend to focus solely on the spatial features of semantic information, while neglecting the importance of the temporal dimension in collaborator selection and semantic information fusion, which instigates performance degradation. In this article, we propose a novel collaborative perception framework, IoSI-CP, which takes into account the importance of semantic information (IoSI) from both temporal and spatial dimensions. Specifically, we develop an IoSI-based collaborator selection method that effectively identifies advantageous collaborators but excludes those that bring negative benefits. Moreover, we present a semantic information fusion algorithm called HPHA (historical prior hybrid attention), which integrates a multi-scale transformer module and a short-term attention module to capture IoSI from spatial and temporal dimensions, and assigns varying weights for efficient aggregation. Extensive experiments on two open datasets demonstrate that our proposed IoSI-CP significantly improves the perception performance compared to state-of-the-art approaches. The code associated with this research is publicly available at https://github.com/huangqzj/IoSI-CP/.