Get our free extension to see links to code for papers anywhere online!

Chrome logo Add to Chrome

Firefox logo Add to Firefox

Picture for Orcun Goksel

Orcun Goksel

ETH Zurich, Uppsala University

Estimating Mean Speed-of-Sound from Sequence-Dependent Geometric Disparities


Sep 24, 2021
Xenia Augustin, Lin Zhang, Orcun Goksel


  Access Paper or Ask Questions

Match What Matters: Generative Implicit Feature Replay for Continual Learning


Jun 09, 2021
Kevin Thandiackal, Tiziano Portenier, Andrea Giovannini, Maria Gabrani, Orcun Goksel


  Access Paper or Ask Questions

Motion Estimation for Optical Coherence Elastography Using Signal Phase and Intensity


Mar 19, 2021
Hossein Khodadadi, Orcun Goksel, Sabine Kling

* 10 pages, 8 figures 

  Access Paper or Ask Questions

Hierarchical Graph Representations in Digital Pathology


Mar 17, 2021
Pushpak Pati, Guillaume Jaume, Antonio Foncubierta, Florinda Feroce, Anna Maria Anniciello, Giosuè Scognamiglio, Nadia Brancati, Maryse Fiche, Estelle Dubruc, Daniel Riccio, Maurizio Di Bonito, Giuseppe De Pietro, Gerardo Botti, Jean-Philippe Thiran, Maria Frucci, Orcun Goksel, Maria Gabrani


  Access Paper or Ask Questions

Content-Preserving Unpaired Translation from Simulated to Realistic Ultrasound Images


Mar 09, 2021
Devavrat Tomar, Lin Zhang, Tiziano Portenier, Orcun Goksel


  Access Paper or Ask Questions

Learning Whole-Slide Segmentation from Inexact and Incomplete Labels using Tissue Graphs


Mar 04, 2021
Valentin Anklin, Pushpak Pati, Guillaume Jaume, Behzad Bozorgtabar, Antonio Foncubierta-RodrĂ­guez, Jean-Philippe Thiran, Mathilde Sibony, Maria Gabrani, Orcun Goksel

* 10 pages, 5 figures 

  Access Paper or Ask Questions

Probabilistic Spatial Analysis in Quantitative Microscopy with Uncertainty-Aware Cell Detection using Deep Bayesian Regression of Density Maps


Feb 23, 2021
Alvaro Gomariz, Tiziano Portenier, CĂ©sar Nombela-Arrieta, Orcun Goksel


  Access Paper or Ask Questions

Hierarchical Cell-to-Tissue Graph Representations for Breast Cancer Subtyping in Digital Pathology


Feb 22, 2021
Pushpak Pati, Guillaume Jaume, Antonio Foncubierta, Florinda Feroce, Anna Maria Anniciello, Giosuè Scognamiglio, Nadia Brancati, Maryse Fiche, Estelle Dubruc, Daniel Riccio, Maurizio Di Bonito, Giuseppe De Pietro, Gerardo Botti, Jean-Philippe Thiran, Maria Frucci, Orcun Goksel, Maria Gabrani


  Access Paper or Ask Questions

Utilizing Uncertainty Estimation in Deep Learning Segmentation of Fluorescence Microscopy Images with Missing Markers


Jan 27, 2021
Alvaro Gomariz, Raphael Egli, Tiziano Portenier, CĂ©sar Nombela-Arrieta, Orcun Goksel

* Accepted at the IEEE International Symposium on Biomedical Imaging (ISBI) 2021. 4 pages and 4 figures 

  Access Paper or Ask Questions

Learning Ultrasound Rendering from Cross-Sectional Model Slices for Simulated Training


Jan 20, 2021
Lin Zhang, Tiziano Portenier, Orcun Goksel


  Access Paper or Ask Questions

Quantifying Explainers of Graph Neural Networks in Computational Pathology


Nov 25, 2020
Guillaume Jaume, Pushpak Pati, Behzad Bozorgtabar, Antonio Foncubierta-RodrĂ­guez, Florinda Feroce, Anna Maria Anniciello, Tilman Rau, Jean-Philippe Thiran, Maria Gabrani, Orcun Goksel


  Access Paper or Ask Questions

Modality Attention and Sampling Enables Deep Learning with Heterogeneous Marker Combinations in Fluorescence Microscopy


Aug 27, 2020
Alvaro Gomariz, Tiziano Portenier, Patrick M. Helbling, Stephan Isringhausen, Ute Suessbier, CĂ©sar Nombela-Arrieta, Orcun Goksel

* 17 pages, 5 figures, 3 pages supplement (3 figures) 

  Access Paper or Ask Questions

Reinforcement Learning of Musculoskeletal Control from Functional Simulations


Jul 13, 2020
Emanuel Joos, Fabien PĂ©an, Orcun Goksel


  Access Paper or Ask Questions

Mitosis Detection Under Limited Annotation: A Joint Learning Approach


Jul 02, 2020
Pushpak Pati, Antonio Foncubierta-Rodriguez, Orcun Goksel, Maria Gabrani

* 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI) 

  Access Paper or Ask Questions

HACT-Net: A Hierarchical Cell-to-Tissue Graph Neural Network for Histopathological Image Classification


Jul 01, 2020
Pushpak Pati, Guillaume Jaume, Lauren Alisha Fernandes, Antonio Foncubierta, Florinda Feroce, Anna Maria Anniciello, Giosue Scognamiglio, Nadia Brancati, Daniel Riccio, Maurizio Do Bonito, Giuseppe De Pietro, Gerardo Botti, Orcun Goksel, Jean-Philippe Thiran, Maria Frucci, Maria Gabrani


  Access Paper or Ask Questions

Towards Explainable Graph Representations in Digital Pathology


Jul 01, 2020
Guillaume Jaume, Pushpak Pati, Antonio Foncubierta-Rodriguez, Florinda Feroce, Giosue Scognamiglio, Anna Maria Anniciello, Jean-Philippe Thiran, Orcun Goksel, Maria Gabrani

* ICML'20 workshop on Computational Biology 

  Access Paper or Ask Questions

GramGAN: Deep 3D Texture Synthesis From 2D Exemplars


Jun 30, 2020
Tiziano Portenier, Siavash Bigdeli, Orcun Goksel


  Access Paper or Ask Questions

Training Variational Networks with Multi-Domain Simulations: Speed-of-Sound Image Reconstruction


Jun 25, 2020
Melanie Bernhardt, Valery Vishnevskiy, Richard Rau, Orcun Goksel


  Access Paper or Ask Questions

Deep Image Translation for Enhancing Simulated Ultrasound Images


Jun 18, 2020
Lin Zhang, Tiziano Portenier, Christoph Paulus, Orcun Goksel


  Access Paper or Ask Questions

Deep Network for Scatterer Distribution Estimation for Ultrasound Image Simulation


Jun 17, 2020
Lin Zhang, Valery Vishnevskiy, Orcun Goksel


  Access Paper or Ask Questions

Delineating Bone Surfaces in B-Mode Images Constrained by Physics of Ultrasound Propagation


Jan 07, 2020
Firat Ozdemir, Christine Tanner, Orcun Goksel

* 11 pages, 8 figures 

  Access Paper or Ask Questions

Active Learning for Segmentation Based on Bayesian Sample Queries


Dec 22, 2019
Firat Ozdemir, Zixuan Peng, Philipp Fuernstahl, Christine Tanner, Orcun Goksel

* 10 pages, 7 figures 

  Access Paper or Ask Questions

Deep Variational Networks with Exponential Weighting for Learning Computed Tomography


Jun 13, 2019
Valery Vishnevskiy, Richard Rau, Orcun Goksel

* Accepted to MICCAI 2019 

  Access Paper or Ask Questions

Weighted Mean Curvature


Mar 17, 2019
Yuanhao Gong, Orcun Goksel

* 12 pages 

  Access Paper or Ask Questions

SCATGAN for Reconstruction of Ultrasound Scatterers Using Generative Adversarial Networks


Feb 01, 2019
Andrawes Al Bahou, Christine Tanner, Orcun Goksel


  Access Paper or Ask Questions

Siamese Networks with Location Prior for Landmark Tracking in Liver Ultrasound Sequences


Jan 23, 2019
Alvaro Gomariz, Weiye Li, Ece Ozkan, Christine Tanner, Orcun Goksel

* Accepted at the IEEE International Symposium on Biomedical Imaging (ISBI) 2019 

  Access Paper or Ask Questions

Extending Pretrained Segmentation Networks with Additional Anatomical Structures


Nov 12, 2018
Firat Ozdemir, Orcun Goksel


  Access Paper or Ask Questions

Implicit Modeling with Uncertainty Estimation for Intravoxel Incoherent Motion Imaging


Oct 22, 2018
Lin Zhang, Valery Vishnevskiy, Andras Jakab, Orcun Goksel


  Access Paper or Ask Questions

Image Reconstruction via Variational Network for Real-Time Hand-Held Sound-Speed Imaging


Jul 19, 2018
Valery Vishnevskiy, Sergio J Sanabria, Orcun Goksel


  Access Paper or Ask Questions