Can a Fruit Fly Learn Word Embeddings?

The mushroom body of the fruit fly brain is one of the best studied systems in neuroscience. At its core it consists of a population of Kenyon cells, which receive inputs from multiple sensory modalities. These cells are inhibited by the anterior paired lateral neuron, thus creating a sparse high dimensional representation of the inputs. In this work we study a mathematical formalization of this network motif and apply it to learning the correlational structure between words and their context in a corpus of unstructured text, a common natural language processing (NLP) task. We show that this network can learn semantic representations of words and can generate both static and context-dependent word embeddings. Unlike conventional methods (e.g., BERT, GloVe) that use dense representations for word embedding, our algorithm encodes semantic meaning of words and their context in the form of sparse binary hash codes. The quality of the learned representations is evaluated on word similarity analysis, word-sense disambiguation, and document classification. It is shown that not only can the fruit fly network motif achieve performance comparable to existing methods in NLP, but, additionally, it uses only a fraction of the computational resources (shorter training time and smaller memory footprint).

Personalized Food Recommendation as Constrained Question Answering over a Large-scale Food Knowledge Graph

Food recommendation has become an important means to help guide users to adopt healthy dietary habits. Previous works on food recommendation either i) fail to consider users' explicit requirements, ii) ignore crucial health factors (e.g., allergies and nutrition needs), or iii) do not utilize the rich food knowledge for recommending healthy recipes. To address these limitations, we propose a novel problem formulation for food recommendation, modeling this task as constrained question answering over a large-scale food knowledge base/graph (KBQA). Besides the requirements from the user query, personalized requirements from the user's dietary preferences and health guidelines are handled in a unified way as additional constraints to the QA system. To validate this idea, we create a QA style dataset for personalized food recommendation based on a large-scale food knowledge graph and health guidelines. Furthermore, we propose a KBQA-based personalized food recommendation framework which is equipped with novel techniques for handling negations and numerical comparisons in the queries. Experimental results on the benchmark show that our approach significantly outperforms non-personalized counterparts (average 59.7% absolute improvement across various evaluation metrics), and is able to recommend more relevant and healthier recipes.

Iterative Deep Graph Learning for Graph Neural Networks: Better and Robust Node Embeddings

In this paper, we propose an end-to-end graph learning framework, namely Iterative Deep Graph Learning (IDGL), for jointly and iteratively learning graph structure and graph embedding. The key rationale of IDGL is to learn a better graph structure based on better node embeddings, and vice versa (i.e., better node embeddings based on a better graph structure). Our iterative method dynamically stops when the learned graph approaches close enough to the graph optimized for the prediction task. In addition, we cast the graph learning problem as a similarity metric learning problem and leverage adaptive graph regularization for controlling the quality of the learned graph. Finally, combining the anchor-based approximation technique, we further propose a scalable version of IDGL, namely IDGL-ANCH, which significantly reduces the time and space complexity of IDGL without compromising the performance. Our extensive experiments on nine benchmarks show that our proposed IDGL models can consistently outperform or match state-of-the-art baselines. Furthermore, IDGL can be more robust to adversarial graphs and cope with both transductive and inductive learning.

MALOnt: An Ontology for Malware Threat Intelligence

Malware threat intelligence uncovers deep information about malware, threat actors, and their tactics, Indicators of Compromise(IoC), and vulnerabilities in different platforms from scattered threat sources. This collective information can guide decision making in cyber defense applications utilized by security operation centers(SoCs). In this paper, we introduce an open-source malware ontology - MALOnt that allows the structured extraction of information and knowledge graph generation, especially for threat intelligence. The knowledge graph that uses MALOnt is instantiated from a corpus comprising hundreds of annotated malware threat reports. The knowledge graph enables the analysis, detection, classification, and attribution of cyber threats caused by malware. We also demonstrate the annotation process using MALOnt on exemplar threat intelligence reports. A work in progress, this research is part of a larger effort towards auto-generation of knowledge graphs (KGs)for gathering malware threat intelligence from heterogeneous online resources.

Toward Subgraph Guided Knowledge Graph Question Generation with Graph Neural Networks

Knowledge graph question generation (QG) aims to generate natural language questions from KG and target answers. Most previous works mainly focusing on the simple setting are to generate questions from a single KG triple. In this work, we focus on a more realistic setting, where we aim to generate questions from a KG subgraph and target answers. In addition, most of previous works built on either RNN-based or Transformer-based models to encode a KG sugraph, which totally discard the explicit structure information contained in a KG subgraph. To address this issue, we propose to apply a bidirectional Graph2Seq model to encode the KG subgraph. In addition, we enhance our RNN decoder with node-level copying mechanism to allow directly copying node attributes from the input graph to the output question. We also explore different ways of initializing node/edge embeddings and handling multi-relational graphs. Our model is end-to-end trainable and achieves new state-of-the-art scores, outperforming existing methods by a significant margin on the two benchmarks.

Personal Health Knowledge Graphs for Patients

Existing patient data analytics platforms fail to incorporate information that has context, is personal, and topical to patients. For a recommendation system to give a suitable response to a query or to derive meaningful insights from patient data, it should consider personal information about the patient's health history, including but not limited to their preferences, locations, and life choices that are currently applicable to them. In this review paper, we critique existing literature in this space and also discuss the various research challenges that come with designing, building, and operationalizing a personal health knowledge graph (PHKG) for patients.

A Framework for Generating Explanations from Temporal Personal Health Data

Whereas it has become easier for individuals to track their personal health data (e.g., heart rate, step count, food log), there is still a wide chasm between the collection of data and the generation of meaningful explanations to help users better understand what their data means to them. With an increased comprehension of their data, users will be able to act upon the newfound information and work towards striving closer to their health goals. We aim to bridge the gap between data collection and explanation generation by mining the data for interesting behavioral findings that may provide hints about a user's tendencies. Our focus is on improving the explainability of temporal personal health data via a set of informative summary templates, or "protoforms." These protoforms span both evaluation-based summaries that help users evaluate their health goals and pattern-based summaries that explain their implicit behaviors. In addition to individual users, the protoforms we use are also designed for population-level summaries. We apply our approach to generate summaries (both univariate and multivariate) from real user data and show that our system can generate interesting and useful explanations.

Deep Iterative and Adaptive Learning for Graph Neural Networks

In this paper, we propose an end-to-end graph learning framework, namely Deep Iterative and Adaptive Learning for Graph Neural Networks (DIAL-GNN), for jointly learning the graph structure and graph embeddings simultaneously. We first cast the graph structure learning problem as a similarity metric learning problem and leverage an adapted graph regularization for controlling smoothness, connectivity and sparsity of the generated graph. We further propose a novel iterative method for searching for a hidden graph structure that augments the initial graph structure. Our iterative method dynamically stops when the learned graph structure approaches close enough to the optimal graph. Our extensive experiments demonstrate that the proposed DIAL-GNN model can consistently outperform or match state-of-the-art baselines in terms of both downstream task performance and computational time. The proposed approach can cope with both transductive learning and inductive learning.

Natural Question Generation with Reinforcement Learning Based Graph-to-Sequence Model

Natural question generation (QG) aims to generate questions from a passage and an answer. In this paper, we propose a novel reinforcement learning (RL) based graph-to-sequence (Graph2Seq) model for QG. Our model consists of a Graph2Seq generator where a novel Bidirectional Gated Graph Neural Network is proposed to embed the passage, and a hybrid evaluator with a mixed objective combining both cross-entropy and RL losses to ensure the generation of syntactically and semantically valid text. The proposed model outperforms previous state-of-the-art methods by a large margin on the SQuAD dataset.

Reinforcement Learning Based Graph-to-Sequence Model for Natural Question Generation

Natural question generation (QG) is a challenging yet rewarding task, that aims to generate questions given an input passage and a target answer. Previous works on QG, however, either (i) ignore the rich structure information hidden in the word sequence, (ii) fail to fully exploit the target answer, or (iii) solely rely on cross-entropy loss that leads to issues like exposure bias and evaluation discrepancy between training and testing. To address the above limitations, in this paper, we propose a reinforcement learning (RL) based graph-to-sequence (Graph2Seq) architecture for the QG task. Our model consists of a Graph2Seq generator where a novel bidirectional graph neural network (GNN) based encoder is applied to embed the input passage incorporating the answer information via a simple yet effective Deep Alignment Network, and an evaluator where a mixed objective function combining both cross-entropy loss and RL loss is designed for ensuring the generation of semantically and syntactically valid text. The proposed model is end-to-end trainable, and achieves new state-of-the-art scores and outperforms all previous methods by a great margin on the SQuAD benchmark.