Self-Supervised Federated Learning under Data Heterogeneity for Label-Scarce Diatom Classification

Label-scarce visual classification under decentralized and heterogeneous data is a fundamental challenge in pattern recognition, especially when sites exhibit partially overlapping class sets. While self-supervised federated learning (SSFL) offers a promising solution, existing studies commonly assume the same data heterogeneity pattern throughout pre-training and fine-tuning. Moreover, current partitioning schemes often fail to generate pure partially class-disjoint data settings, limiting controllable simulation of real-world label-space heterogeneity. In this work, we introduce SSFL for diatom classification as a representative real-world instance and systematically investigate stage-specific data heterogeneity. We study cross-site variation in unlabeled data volume during pre-training and label-space misalignment during downstream fine-tuning. To study the latter in a controllable setting, we propose PreDi, a partitioning scheme that disentangles label-space heterogeneity into two orthogonal dimensions, namely class Prevalence and class-set size Disparity, enabling separate analysis of their effects. Guided by the resulting insights, we further propose PreP-WFL (Prevalence-based Personalized Weighted Federated Learning) to adaptively strengthen rare-class representations in low-prevalence scenarios. Extensive experiments show that SSFL consistently outperforms local-only training under both homogeneous and heterogeneous settings. The pronounced heterogeneity in unlabeled data volume is associated with improved representation pre-training, whereas under label-space heterogeneity, prevalence dominates performance and disparity has a smaller effect. PreP-WFL effectively mitigates this degradation, with gains increasing as prevalence decreases. These findings provide a mechanistic basis for characterizing label-space heterogeneity in decentralized recognition systems.

Leveraging Phytolith Research using Artificial Intelligence

Phytolith analysis is a crucial tool for reconstructing past vegetation and human activities, but traditional methods are severely limited by labour-intensive, time-consuming manual microscopy. To address this bottleneck, we present Sorometry: a comprehensive end-to-end artificial intelligence pipeline for the high-throughput digitisation, inference, and interpretation of phytoliths. Our workflow processes z-stacked optical microscope scans to automatically generate synchronised 2D orthoimages and 3D point clouds of individual microscopic particles. We developed a multimodal fusion model that combines ConvNeXt for 2D image analysis and PointNet++ for 3D point cloud analysis, supported by a graphical user interface for expert annotation and review. Tested on reference collections and archaeological samples from the Bolivian Amazon, our fusion model achieved a global classification accuracy of 77.9\% across 24 diagnostic morphotypes and 84.5% for segmentation quality. Crucially, the integration of 3D data proved essential for distinguishing complex morphotypes (such as grass silica short cell phytoliths) whose diagnostic features are often obscured by their orientation in 2D projections. Beyond individual object classification, Sorometry incorporates Bayesian finite mixture modelling to predict overall plant source contributions at the assemblage level, successfully identifying specific plants like maize and palms in complex mixed samples. This integrated platform transforms phytolith research into an "omics"-scale discipline, dramatically expanding analytical capacity, standardising expert judgements, and enabling reproducible, population-level characterisations of archaeological and paleoecological assemblages.