EMBL AI Librarian: Life-Sciences Knowledge Layer for AI Agents

The web is increasingly accessed by AI agents rather than humans. Every agent needs knowledge, especially in the life-sciences, where agentic pipelines are growing fast. Access to the literature is a crucial part of that need, and resources such as Europe PMC, with over 40M indexed records, are widely used to meet it. Yet these resources were not built for AI agents: they take keywords and complex syntax and return whole papers, so every agent must learn the syntax, issue several searches, and read full papers to find the evidence it needs. We introduce EMBL AI Librarian, a knowledge layer that upgrades the Europe PMC interface for AI agents: an agent asks in natural language and receives evidence that answers it. A single LLM orchestrates the whole knowledge retrieval process: it plans complementary subqueries executed by the live Europe PMC search engine, then reads the selected papers and locates the relevant evidence. We evaluate Librarian across four benchmarks: literature synthesis, claim verification, open-domain question answering, and downstream biology tasks such as protocol questions and sequence manipulation. On ScholarQABench, Librarian improves Citation F1 by more than $16$ points over strong recently published baselines. Used as the retrieval layer of an existing claim-verification pipeline, it increases agreement with expert consensus; and on the open-form LitQA2 benchmark, a GPT-5.4 agent scores about $8$ points higher when grounded in Librarian than with web search. Overall, our results show that equipping life-science agents with the Librarian knowledge layer improves performance across a range of tasks. We release our code publicly at https://github.com/petroni-lab/librarian

Evaluating Latent Knowledge of Public Tabular Datasets in Large Language Models

Large Language Models (LLMs) are increasingly evaluated on their ability to reason over structured data, yet such assessments often overlook a crucial confound: dataset contamination. In this work, we investigate whether LLMs exhibit prior knowledge of widely used tabular benchmarks such as Adult Income, Titanic, and others. Through a series of controlled probing experiments, we reveal that contamination effects emerge exclusively for datasets containing strong semantic cues-for instance, meaningful column names or interpretable value categories. In contrast, when such cues are removed or randomized, performance sharply declines to near-random levels. These findings suggest that LLMs' apparent competence on tabular reasoning tasks may, in part, reflect memorization of publicly available datasets rather than genuine generalization. We discuss implications for evaluation protocols and propose strategies to disentangle semantic leakage from authentic reasoning ability in future LLM assessments.