Mouse Lockbox Dataset: Behavior Recognition for Mice Solving Lockboxes

Machine learning and computer vision methods have a major impact on the study of natural animal behavior, as they enable the (semi-)automatic analysis of vast amounts of video data. Mice are the standard mammalian model system in most research fields, but the datasets available today to refine such methods focus either on simple or social behaviors. In this work, we present a video dataset of individual mice solving complex mechanical puzzles, so-called lockboxes. The more than 110 hours of total playtime show their behavior recorded from three different perspectives. As a benchmark for frame-level action classification methods, we provide human-annotated labels for all videos of two different mice, that equal 13% of our dataset. Our keypoint (pose) tracking-based action classification framework illustrates the challenges of automated labeling of fine-grained behaviors, such as the manipulation of objects. We hope that our work will help accelerate the advancement of automated action and behavior classification in the computational neuroscience community. Our dataset is publicly available at https://doi.org/10.14279/depositonce-23850

Tracking Mouse from Incomplete Body-Part Observations and Deep-Learned Deformable-Mouse Model Motion-Track Constraint for Behavior Analysis

Tracking mouse body parts in video is often incomplete due to occlusions such that - e.g. - subsequent action and behavior analysis is impeded. In this conceptual work, videos from several perspectives are integrated via global exterior camera orientation; body part positions are estimated by 3D triangulation and bundle adjustment. Consistency of overall 3D track reconstruction is achieved by introduction of a 3D mouse model, deep-learned body part movements, and global motion-track smoothness constraint. The resulting 3D body and body part track estimates are substantially more complete than the original single-frame-based body part detection, therefore, allowing improved animal behavior analysis.

MouseSIS: A Frames-and-Events Dataset for Space-Time Instance Segmentation of Mice

Enabled by large annotated datasets, tracking and segmentation of objects in videos has made remarkable progress in recent years. Despite these advancements, algorithms still struggle under degraded conditions and during fast movements. Event cameras are novel sensors with high temporal resolution and high dynamic range that offer promising advantages to address these challenges. However, annotated data for developing learning-based mask-level tracking algorithms with events is not available. To this end, we introduce: ($i$) a new task termed \emph{space-time instance segmentation}, similar to video instance segmentation, whose goal is to segment instances throughout the entire duration of the sensor input (here, the input are quasi-continuous events and optionally aligned frames); and ($ii$) \emph{\dname}, a dataset for the new task, containing aligned grayscale frames and events. It includes annotated ground-truth labels (pixel-level instance segmentation masks) of a group of up to seven freely moving and interacting mice. We also provide two reference methods, which show that leveraging event data can consistently improve tracking performance, especially when used in combination with conventional cameras. The results highlight the potential of event-aided tracking in difficult scenarios. We hope our dataset opens the field of event-based video instance segmentation and enables the development of robust tracking algorithms for challenging conditions.\url{https://github.com/tub-rip/MouseSIS}