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Toward a Neural Semantic Parsing System for EHR Question Answering


Nov 08, 2022
Sarvesh Soni, Kirk Roberts

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* Accepted at the AMIA Annual Symposium 2022 (10 pages, 5 tables, 1 figure) 

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DrugEHRQA: A Question Answering Dataset on Structured and Unstructured Electronic Health Records For Medicine Related Queries


May 03, 2022
Jayetri Bardhan, Anthony Colas, Kirk Roberts, Daisy Zhe Wang

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* 15 pages (including Appendix section), 7 figures 

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Searching for Scientific Evidence in a Pandemic: An Overview of TREC-COVID


Apr 19, 2021
Kirk Roberts, Tasmeer Alam, Steven Bedrick, Dina Demner-Fushman, Kyle Lo, Ian Soboroff, Ellen Voorhees, Lucy Lu Wang, William R Hersh

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Hierarchical Transformer Networks for Longitudinal Clinical Document Classification


Apr 17, 2021
Yuqi Si, Kirk Roberts

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* Work in progress 

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Generalized and Transferable Patient Language Representation for Phenotyping with Limited Data


Feb 24, 2021
Yuqi Si, Elmer V Bernstam, Kirk Roberts

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* Journal of Biomedical Informatics (in press) 

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Leveraging Spatial Information in Radiology Reports for Ischemic Stroke Phenotyping


Oct 10, 2020
Surabhi Datta, Shekhar Khanpara, Roy F. Riascos, Kirk Roberts

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Deep Representation Learning of Patient Data from Electronic Health Records (EHR): A Systematic Review


Oct 06, 2020
Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy Miller, Fei Wang, W. Jim Zheng, Kirk Roberts

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Extracting Concepts for Precision Oncology from the Biomedical Literature


Sep 30, 2020
Nicholas Greenspan, Yuqi Si, Kirk Roberts

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RadLex Normalization in Radiology Reports


Sep 10, 2020
Surabhi Datta, Jordan Godfrey-Stovall, Kirk Roberts

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* Accepted at the AMIA Annual Symposium 2020 

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Patient Cohort Retrieval using Transformer Language Models


Sep 10, 2020
Sarvesh Soni, Kirk Roberts

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* Accepted at the AMIA Annual Symposium 2020 

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