Multi-layer attentive probing improves transfer of audio representations for bioacoustics

Probing heads map the representations learned from audio by a machine learning model to downstream task labels and are a key component in evaluating representation learning. Most bioacoustic benchmarks use a fixed, low-capacity probe, such as a linear layer on the final encoder layer. While this standardization enables model comparisons, it may bias results by overlooking the interaction between encoder features and probe design. In this work, we systematically study different probing strategies across two bioacoustic benchmarks, BEANs and BirdSet. We evaluate last- and multi-layer probing, across linear and attention probes. We show that larger probe heads that leverage time information have superior performance. Our results suggest that current benchmarks may misrepresent encoder quality when relying on a last-layer probing setup. Multi-layer probing improves downstream task performance across all tested models, while attention probing has superior performance to linear probing for transformer models.

Crossing the Species Divide: Transfer Learning from Speech to Animal Sounds

Self-supervised speech models have demonstrated impressive performance in speech processing, but their effectiveness on non-speech data remains underexplored. We study the transfer learning capabilities of such models on bioacoustic detection and classification tasks. We show that models such as HuBERT, WavLM, and XEUS can generate rich latent representations of animal sounds across taxa. We analyze the models properties with linear probing on time-averaged representations. We then extend the approach to account for the effect of time-wise information with other downstream architectures. Finally, we study the implication of frequency range and noise on performance. Notably, our results are competitive with fine-tuned bioacoustic pre-trained models and show the impact of noise-robust pre-training setups. These findings highlight the potential of speech-based self-supervised learning as an efficient framework for advancing bioacoustic research.