The Animal ID Problem: Continual Curation

Hoping to stimulate new research in individual animal identification from images, we propose to formulate the problem as the human-machine Continual Curation of images and animal identities. This is an open world recognition problem, where most new animals enter the system after its algorithms are initially trained and deployed. Continual Curation, as defined here, requires (1) an improvement in the effectiveness of current recognition methods, (2) a pairwise verification algorithm that allows the possibility of no decision, and (3) an algorithmic decision mechanism that seeks human input to guide the curation process. Error metrics must evaluate the ability of recognition algorithms to identify not only animals that have been seen just once or twice but also recognize new animals not in the database. An important measure of overall system performance is accuracy as a function of the amount of human input required.

Integral Curvature Representation and Matching Algorithms for Identification of Dolphins and Whales

We address the problem of identifying individual cetaceans from images showing the trailing edge of their fins. Given the trailing edge from an unknown individual, we produce a ranking of known individuals from a database. The nicks and notches along the trailing edge define an individual's unique signature. We define a representation based on integral curvature that is robust to changes in viewpoint and pose, and captures the pattern of nicks and notches in a local neighborhood at multiple scales. We explore two ranking methods that use this representation. The first uses a dynamic programming time-warping algorithm to align two representations, and interprets the alignment cost as a measure of similarity. This algorithm also exploits learned spatial weights to downweight matches from regions of unstable curvature. The second interprets the representation as a feature descriptor. Feature keypoints are defined at the local extrema of the representation. Descriptors for the set of known individuals are stored in a tree structure, which allows us to perform queries given the descriptors from an unknown trailing edge. We evaluate the top-k accuracy on two real-world datasets to demonstrate the effectiveness of the curvature representation, achieving top-1 accuracy scores of approximately 95% and 80% for bottlenose dolphins and humpback whales, respectively.