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Jan Egger

Learning to Rearrange Voxels in Binary Segmentation Masks for Smooth Manifold Triangulation


Aug 11, 2021
Jianning Li, Antonio Pepe, Christina Gsaxner, Yuan Jin, Jan Egger

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* 18 pages, 11 figures, 1 table, 14 references 
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AI-based Aortic Vessel Tree Segmentation for Cardiovascular Diseases Treatment: Status Quo


Aug 06, 2021
Yuan Jin, Antonio Pepe, Jianning Li, Christina Gsaxner, Fen-hua Zhao, Jens Kleesiek, Alejandro F. Frangi, Jan Egger

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* 44 pages (inclusive three pages supplemental material), 10 figures, 6 tables, 100 references 
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Deep Learning -- A first Meta-Survey of selected Reviews across Scientific Disciplines and their Research Impact


Nov 16, 2020
Jan Egger, Antonio Pepe, Christina Gsaxner, Jianning Li

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* 39 pages, 5 tables, 80 references 
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Medical Deep Learning -- A systematic Meta-Review


Oct 28, 2020
Jan Egger, Christina Gsxaner, Antonio Pepe, Jianning Li

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* 46 pages, 4 tables, 150 references 
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A Baseline Approach for AutoImplant: the MICCAI 2020 Cranial Implant Design Challenge


Jun 24, 2020
Jianning Li, Antonio Pepe, Christina Gsaxner, Gord von Campe, Jan Egger

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* 12 pages 
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An Online Platform for Automatic Skull Defect Restoration and Cranial Implant Design


Jun 01, 2020
Jianning Li, Antonio Pepe, Christina Gsaxner, Jan Egger

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* 5 pages 
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Design and Development of a Web-based Tool for Inpainting of Dissected Aortae in Angiography Images


May 06, 2020
Alexander Prutsch, Antonio Pepe, Jan Egger

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* The 24th Central European Seminar on Computer Graphics (CESCG), pp. 1-8, May. 2020 
 * 9 figures, 14 references 
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Client/Server Based Online Environment for Manual Segmentation of Medical Images


Apr 18, 2019
Daniel Wild, Maximilian Weber, Jan Egger

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* Proceedings of CESCG 2019: The 23rd Central European Seminar on Computer Graphics 
 * 8 pages 
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Exploit fully automatic low-level segmented PET data for training high-level deep learning algorithms for the corresponding CT data


Mar 07, 2019
Christina Gsaxner, Peter M. Roth, Jürgen Wallner, Jan Egger

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* PLoS ONE 14(3): e0212550 (2019) 
 * 20 pages 
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Computed tomography data collection of the complete human mandible and valid clinical ground truth models


Feb 14, 2019
Jürgen Wallner, Irene Mischak, Jan Egger

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* Wallner, J. et al. Computed tomography data collection of the complete human mandible and valid clinical ground truth models. Sci. Data. 6:190003 https://doi.org/10.1038/sdata.2019.3 (2019) 
 * 14 pages, 8 Figures, 4 Tables, 55 References 
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Clinical evaluation of semi-automatic opensource algorithmic software segmentation of the mandibular bone: Practical feasibility and assessment of a new course of action


May 11, 2018
Jürgen Wallner, Kerstin Hochegger, Xiaojun Chen, Irene Mischak, Knut Reinbacher, Mauro Pau, Tomislav Zrnc, Katja Schwenzer-Zimmerer, Wolfgang Zemann, Dieter Schmalstieg, Jan Egger

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* Wallner J, et al. (2018) Clinical evaluation of semi-automatic open-source algorithmic software segmentation of the mandibular bone: Practical feasibility and assessment of a new course of action. PLoS ONE 13(5):e0196378 
 * 26 pages 
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In-depth Assessment of an Interactive Graph-based Approach for the Segmentation for Pancreatic Metastasis in Ultrasound Acquisitions of the Liver with two Specialists in Internal Medicine


Mar 12, 2018
Jan Egger, Xiaojun Chen, Lucas Bettac, Mark Hänle, Tilmann Gräter, Wolfram Zoller, Dieter Schmalstieg, Alexander Hann

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* 5 pages, 3 Figures, 1 Table, The 2017 Biomedical Engineering International Conference (BMEiCON-2017) 
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Vertebral body segmentation with GrowCut: Initial experience, workflow and practical application


Nov 13, 2017
Jan Egger, Christopher Nimsky, Xiaojun Chen

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* SAGE Open Medicine, Volume 5, pp. 1-10, Nov. 2017 
 * 10 pages 
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Algorithm guided outlining of 105 pancreatic cancer liver metastases in Ultrasound


Oct 09, 2017
Alexander Hann, Lucas Bettac, Mark M. Haenle, Tilmann Graeter, Andreas W. Berger, Jens Dreyhaupt, Dieter Schmalstieg, Wolfram G. Zoller, Jan Egger

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* Sci Rep. 2017 Oct 6;7(1):12779 
 * 7 pages, 3 Figures, 3 Tables, 46 References 
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Computer-aided position planning of miniplates to treat facial bone defects


Aug 17, 2017
Jan Egger, Jürgen Wallner, Markus Gall, Xiaojun Chen, Katja Schwenzer-Zimmerer, Knut Reinbacher, Dieter Schmalstieg

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* PLoS ONE 12(8): e0182839 (2017) 
 * 19 pages, 13 Figures, 2 Tables 
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Computer-aided implant design for the restoration of cranial defects


Jun 23, 2017
Xiaojun Chen, Lu Xu, Xing Li, Jan Egger

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* Scientific Reports 7, Article number: 4199 (2017) 
 * 10 pages, 12 figures, 20 References 
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Interactive Outlining of Pancreatic Cancer Liver Metastases in Ultrasound Images


Apr 18, 2017
Jan Egger, Dieter Schmalstieg, Xiaojun Chen, Wolfram G. Zoller, Alexander Hann

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* Sci. Rep. 7, 892, 2017 
 * 15 pages, 16 figures, 2 tables, 58 references 
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Interactive and Scale Invariant Segmentation of the Rectum/Sigmoid via User-Defined Templates


Mar 03, 2016
Tobias Lüddemann, Jan Egger

* SPIE Medical Imaging Conference 2016, Paper 9784-113 
 * 6 pages, 4 figures, 1 table, 43 references 
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Cellular Automata Segmentation of the Boundary between the Compacta of Vertebral Bodies and Surrounding Structures


Mar 03, 2016
Jan Egger, Christopher Nimsky

* SPIE Medical Imaging Conference 2016, Paper 9787-52 
 * 6 pages, 5 figures, 1 table, 42 references 
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US-Cut: Interactive Algorithm for rapid Detection and Segmentation of Liver Tumors in Ultrasound Acquisitions


Mar 02, 2016
Jan Egger, Philip Voglreiter, Mark Dokter, Michael Hofmann, Xiaojun Chen, Wolfram G. Zoller, Dieter Schmalstieg, Alexander Hann

* SPIE Medical Imaging Conference 2016, Paper 9790-47 
 * 6 pages, 6 figures, 1 table, 32 references 
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Detection and Visualization of Endoleaks in CT Data for Monitoring of Thoracic and Abdominal Aortic Aneurysm Stents


Feb 09, 2016
Jing Lu, Jan Egger, Andreas Wimmer, Stefan Großkopf, Bernd Freisleben

* 7 pages, 7 figures, 1 table, 12 references, Proc. SPIE 6918, Medical Imaging 2008: Visualization, Image-Guided Procedures, and Modeling, 69181F (17 March 2008) 
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Preoperative Volume Determination for Pituitary Adenoma


Feb 05, 2016
Dzenan Zukic, Jan Egger, Miriam H. A. Bauer, Daniela Kuhnt, Barbara Carl, Bernd Freisleben, Andreas Kolb, Christopher Nimsky

* 7 pages, 6 figures, 1 table, 16 references in Proc. SPIE 7963, Medical Imaging 2011: Computer-Aided Diagnosis, 79632T (9 March 2011). arXiv admin note: text overlap with arXiv:1103.1778 
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A semi-automatic computer-aided method for surgical template design


Feb 04, 2016
Xiaojun Chen, Lu Xu, Yue Yang, Jan Egger

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* Scientific Reports 6, Article number: 20280, 2016 
 * 18 pages, 16 figures, 2 tables, 36 references 
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Interactive Volumetry Of Liver Ablation Zones


Oct 21, 2015
Jan Egger, Harald Busse, Philipp Brandmaier, Daniel Seider, Matthias Gawlitza, Steffen Strocka, Philip Voglreiter, Mark Dokter, Michael Hofmann, Bernhard Kainz, Alexander Hann, Xiaojun Chen, Tuomas Alhonnoro, Mika Pollari, Dieter Schmalstieg, Michael Moche

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* Sci. Rep. 5, 15373; doi: 10.1038/srep15373 (2015) 
 * 18 pages, 15 figures, 8 tables, 57 references 
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Cube-Cut: Vertebral Body Segmentation in MRI-Data through Cubic-Shaped Divergences


Jul 22, 2014
Robert Schwarzenberg, Bernd Freisleben, Christopher Nimsky, Jan Egger

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* 23 figures, 2 tables, 43 references, PLoS ONE 9(4): e93389 
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Refinement-Cut: User-Guided Segmentation Algorithm for Translational Science


Jun 07, 2014
Jan Egger

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* Sci. Rep. 4, 5164, 2014 
 * 6 figures, 50 references 
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A Ray-based Approach for Boundary Estimation of Fiber Bundles Derived from Diffusion Tensor Imaging


Oct 23, 2013
Miriam H. A. Bauer, Sebastiano Barbieri, Jan Klein, Jan Egger, Daniela Kuhnt, Bernd Freisleben, Horst K. Hahn, Christopher Nimsky

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* Int J CARS, Vol. 5, Suppl. 1, pp. 47-48, Springer Press, June 2010 
 * 5 pages, 2 figures, 7 references 
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Determination, Calculation and Representation of the Upper and Lower Sealing Zones During Virtual Stenting of Aneurysms


Oct 21, 2013
Jan Egger, Miriam H. A. Bauer, Stefan Großkopf, Christina Biermann, Bernd Freisleben, Christopher Nimsky

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* Int J CARS, Vol. 5, Suppl. 1, pp. 13-14, Springer Press, June 2010 
 * 4 pages, 2 figures, 10 references 
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PCG-Cut: Graph Driven Segmentation of the Prostate Central Gland


Oct 12, 2013
Jan Egger

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* PLoS ONE 8(10): e76645 (2013) 
 * 6 pages, 6 figures, 2 tables, 52 references 
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