Algebraic Representability as the Limiting Regime of Grokking: An Exactly Solvable Model with Holomorphic Activations

Neural networks trained on modular arithmetic exhibit grokking, a delayed transition from memorisation to generalisation known to depend on model capacity: too little and the network memorises slowly or not at all, too much and it generalises almost immediately. What happens at the extreme of this spectrum, when the architecture's expressible function class collapses to a finite-dimensional algebraic variety? We study two-layer networks with a holomorphic monomial activation sigma(z)=z^k, trained on modular tasks encoded via roots of unity. Here the network output, regardless of hidden width, is confined to a (k+1)-dimensional subspace of characters of (Z_p)^2, an O(k/p^2) slice of the full function space. We give a complete algebraic characterisation of this subspace: a task is representable if and only if its discrete Fourier support lies on the diagonal u+v = k (mod p), which for linear-phase targets reduces to the arithmetic criterion m+n=k. This is not merely a constraint on eventual generalisation but on memorisation itself: because the outputs are algebraically confined, a non-representable target cannot be fit even on the training set, and we prove a positive lower bound on the training loss, independent of width. Across 585 runs the algebraic prediction matches the observed outcome with 99.8% accuracy, with no memorisation regime and no grokking; outcomes split cleanly into instant success and outright failure. This binary behaviour is the limiting case of the capacity-grokking relationship: when the expressible class shrinks to a fixed algebraic object, the question of when a network will grok dissolves into whether it can represent the target at all. A bottleneck ablation connects this extreme to standard networks, tracing a continuous path from representational failure, through memorisation without generalisation, to grokking with a shrinking gap as capacity grows.

From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering

Protein design with desirable properties has been a significant challenge for many decades. Generative artificial intelligence is a promising approach and has achieved great success in various protein generation tasks. Notably, diffusion models stand out for their robust mathematical foundations and impressive generative capabilities, offering unique advantages in certain applications such as protein design. In this review, we first give the definition and characteristics of diffusion models and then focus on two strategies: Denoising Diffusion Probabilistic Models and Score-based Generative Models, where DDPM is the discrete form of SGM. Furthermore, we discuss their applications in protein design, peptide generation, drug discovery, and protein-ligand interaction. Finally, we outline the future perspectives of diffusion models to advance autonomous protein design and engineering. The E(3) group consists of all rotations, reflections, and translations in three-dimensions. The equivariance on the E(3) group can keep the physical stability of the frame of each amino acid as much as possible, and we reflect on how to keep the diffusion model E(3) equivariant for protein generation.