Learning in Feature Spaces via Coupled Covariances: Asymmetric Kernel SVD and Nyström method

In contrast with Mercer kernel-based approaches as used e.g., in Kernel Principal Component Analysis (KPCA), it was previously shown that Singular Value Decomposition (SVD) inherently relates to asymmetric kernels and Asymmetric Kernel Singular Value Decomposition (KSVD) has been proposed. However, the existing formulation to KSVD cannot work with infinite-dimensional feature mappings, the variational objective can be unbounded, and needs further numerical evaluation and exploration towards machine learning. In this work, i) we introduce a new asymmetric learning paradigm based on coupled covariance eigenproblem (CCE) through covariance operators, allowing infinite-dimensional feature maps. The solution to CCE is ultimately obtained from the SVD of the induced asymmetric kernel matrix, providing links to KSVD. ii) Starting from the integral equations corresponding to a pair of coupled adjoint eigenfunctions, we formalize the asymmetric Nystr\"om method through a finite sample approximation to speed up training. iii) We provide the first empirical evaluations verifying the practical utility and benefits of KSVD and compare with methods resorting to symmetrization or linear SVD across multiple tasks.

HeNCler: Node Clustering in Heterophilous Graphs through Learned Asymmetric Similarity

Clustering nodes in heterophilous graphs presents unique challenges due to the asymmetric relationships often overlooked by traditional methods, which moreover assume that good clustering corresponds to high intra-cluster and low inter-cluster connectivity. To address these issues, we introduce HeNCler - a novel approach for Heterophilous Node Clustering. Our method begins by defining a weighted kernel singular value decomposition to create an asymmetric similarity graph, applicable to both directed and undirected graphs. We further establish that the dual problem of this formulation aligns with asymmetric kernel spectral clustering, interpreting learned graph similarities without relying on homophily. We demonstrate the ability to solve the primal problem directly, circumventing the computational difficulties of the dual approach. Experimental evidence confirms that HeNCler significantly enhances performance in node clustering tasks within heterophilous graph contexts.

Self-Attention through Kernel-Eigen Pair Sparse Variational Gaussian Processes

While the great capability of Transformers significantly boosts prediction accuracy, it could also yield overconfident predictions and require calibrated uncertainty estimation, which can be commonly tackled by Gaussian processes (GPs). Existing works apply GPs with symmetric kernels under variational inference to the attention kernel; however, omitting the fact that attention kernels are in essence asymmetric. Moreover, the complexity of deriving the GP posteriors remains high for large-scale data. In this work, we propose Kernel-Eigen Pair Sparse Variational Gaussian Processes (KEP-SVGP) for building uncertainty-aware self-attention where the asymmetry of attention kernels is tackled by Kernel SVD (KSVD) and a reduced complexity is acquired. Through KEP-SVGP, i) the SVGP pair induced by the two sets of singular vectors from KSVD w.r.t. the attention kernel fully characterizes the asymmetry; ii) using only a small set of adjoint eigenfunctions from KSVD, the derivation of SVGP posteriors can be based on the inversion of a diagonal matrix containing singular values, contributing to a reduction in time complexity; iii) an evidence lower bound is derived so that variational parameters can be optimized towards this objective. Experiments verify our excellent performances and efficiency on in-distribution, distribution-shift and out-of-distribution benchmarks.

Nonlinear SVD with Asymmetric Kernels: feature learning and asymmetric Nyström method

Asymmetric data naturally exist in real life, such as directed graphs. Different from the common kernel methods requiring Mercer kernels, this paper tackles the asymmetric kernel-based learning problem. We describe a nonlinear extension of the matrix Singular Value Decomposition through asymmetric kernels, namely KSVD. First, we construct two nonlinear feature mappings w.r.t. rows and columns of the given data matrix. The proposed optimization problem maximizes the variance of each mapping projected onto the subspace spanned by the other, subject to a mutual orthogonality constraint. Through Lagrangian duality, we show that it can be solved by the left and right singular vectors in the feature space induced by the asymmetric kernel. Moreover, we start from the integral equations with a pair of adjoint eigenfunctions corresponding to the singular vectors on an asymmetrical kernel, and extend the Nystr\"om method to asymmetric cases through the finite sample approximation, which can be applied to speedup the training in KSVD. Experiments show that asymmetric KSVD learns features outperforming Mercer-kernel based methods that resort to symmetrization, and also verify the effectiveness of the asymmetric Nystr\"om method.

Combining Primal and Dual Representations in Deep Restricted Kernel Machines Classifiers

In contrast to deep networks, kernel methods cannot directly take advantage of depth. In this regard, the deep Restricted Kernel Machine (DRKM) framework allows multiple levels of kernel PCA (KPCA) and Least-Squares Support Vector Machines (LSSVM) to be combined into a deep architecture using visible and hidden units. We propose a new method for DRKM classification coupling the objectives of KPCA and classification levels, with the hidden feature matrix lying on the Stiefel manifold. The classification level can be formulated as an LSSVM or as an MLP feature map, combining depth in terms of levels and layers. The classification level is expressed in its primal formulation, as the deep KPCA levels can embed the most informative components of the data in a much lower dimensional space. In the experiments on benchmark datasets with few available training points, we show that our deep method improves over the LSSVM/MLP and that models with multiple KPCA levels can outperform models with a single level.

Extending Kernel PCA through Dualization: Sparsity, Robustness and Fast Algorithms

The goal of this paper is to revisit Kernel Principal Component Analysis (KPCA) through dualization of a difference of convex functions. This allows to naturally extend KPCA to multiple objective functions and leads to efficient gradient-based algorithms avoiding the expensive SVD of the Gram matrix. Particularly, we consider objective functions that can be written as Moreau envelopes, demonstrating how to promote robustness and sparsity within the same framework. The proposed method is evaluated on synthetic and real-world benchmarks, showing significant speedup in KPCA training time as well as highlighting the benefits in terms of robustness and sparsity.

Primal-Attention: Self-attention through Asymmetric Kernel SVD in Primal Representation

Recently, a new line of works has emerged to understand and improve self-attention in Transformers by treating it as a kernel machine. However, existing works apply the methods for symmetric kernels to the asymmetric self-attention, resulting in a nontrivial gap between the analytical understanding and numerical implementation. In this paper, we provide a new perspective to represent and optimize self-attention through asymmetric Kernel Singular Value Decomposition (KSVD), which is also motivated by the low-rank property of self-attention normally observed in deep layers. Through asymmetric KSVD, $i$) a primal-dual representation of self-attention is formulated, where the optimization objective is cast to maximize the projection variances in the attention outputs; $ii$) a novel attention mechanism, i.e., Primal-Attention, is proposed via the primal representation of KSVD, avoiding explicit computation of the kernel matrix in the dual; $iii$) with KKT conditions, we prove that the stationary solution to the KSVD optimization in Primal-Attention yields a zero-value objective. In this manner, KSVD optimization can be implemented by simply minimizing a regularization loss, so that low-rank property is promoted without extra decomposition. Numerical experiments show state-of-the-art performance of our Primal-Attention with improved efficiency. Moreover, we demonstrate that the deployed KSVD optimization regularizes Primal-Attention with a sharper singular value decay than that of the canonical self-attention, further verifying the great potential of our method. To the best of our knowledge, this is the first work that provides a primal-dual representation for the asymmetric kernel in self-attention and successfully applies it to modeling and optimization.

Deep Kernel Principal Component Analysis for Multi-level Feature Learning

Principal Component Analysis (PCA) and its nonlinear extension Kernel PCA (KPCA) are widely used across science and industry for data analysis and dimensionality reduction. Modern deep learning tools have achieved great empirical success, but a framework for deep principal component analysis is still lacking. Here we develop a deep kernel PCA methodology (DKPCA) to extract multiple levels of the most informative components of the data. Our scheme can effectively identify new hierarchical variables, called deep principal components, capturing the main characteristics of high-dimensional data through a simple and interpretable numerical optimization. We couple the principal components of multiple KPCA levels, theoretically showing that DKPCA creates both forward and backward dependency across levels, which has not been explored in kernel methods and yet is crucial to extract more informative features. Various experimental evaluations on multiple data types show that DKPCA finds more efficient and disentangled representations with higher explained variance in fewer principal components, compared to the shallow KPCA. We demonstrate that our method allows for effective hierarchical data exploration, with the ability to separate the key generative factors of the input data both for large datasets and when few training samples are available. Overall, DKPCA can facilitate the extraction of useful patterns from high-dimensional data by learning more informative features organized in different levels, giving diversified aspects to explore the variation factors in the data, while maintaining a simple mathematical formulation.

Semi-Supervised Classification with Graph Convolutional Kernel Machines

We present a deep Graph Convolutional Kernel Machine (GCKM) for semi-supervised node classification in graphs. First, we introduce an unsupervised kernel machine propagating the node features in a one-hop neighbourhood. Then, we specify a semi-supervised classification kernel machine through the lens of the Fenchel-Young inequality. The deep graph convolutional kernel machine is obtained by stacking multiple shallow kernel machines. After showing that unsupervised and semi-supervised layer corresponds to an eigenvalue problem and a linear system on the aggregated node features, respectively, we derive an efficient end-to-end training algorithm in the dual variables. Numerical experiments demonstrate that our approach is competitive with state-of-the-art graph neural networks for homophilious and heterophilious benchmark datasets. Notably, GCKM achieves superior performance when very few labels are available.

Tensor-based Multi-view Spectral Clustering via Shared Latent Space

Multi-view Spectral Clustering (MvSC) attracts increasing attention due to diverse data sources. However, most existing works are prohibited in out-of-sample predictions and overlook model interpretability and exploration of clustering results. In this paper, a new method for MvSC is proposed via a shared latent space from the Restricted Kernel Machine framework. Through the lens of conjugate feature duality, we cast the weighted kernel principal component analysis problem for MvSC and develop a modified weighted conjugate feature duality to formulate dual variables. In our method, the dual variables, playing the role of hidden features, are shared by all views to construct a common latent space, coupling the views by learning projections from view-specific spaces. Such single latent space promotes well-separated clusters and provides straightforward data exploration, facilitating visualization and interpretation. Our method requires only a single eigendecomposition, whose dimension is independent of the number of views. To boost higher-order correlations, tensor-based modelling is introduced without increasing computational complexity. Our method can be flexibly applied with out-of-sample extensions, enabling greatly improved efficiency for large-scale data with fixed-size kernel schemes. Numerical experiments verify that our method is effective regarding accuracy, efficiency, and interpretability, showing a sharp eigenvalue decay and distinct latent variable distributions.