Squeezing Lemons with Hammers: An Evaluation of AutoML and Tabular Deep Learning for Data-Scarce Classification Applications

Many industry verticals are confronted with small-sized tabular data. In this low-data regime, it is currently unclear whether the best performance can be expected from simple baselines, or more complex machine learning approaches that leverage meta-learning and ensembling. On 44 tabular classification datasets with sample sizes $\leq$ 500, we find that L2-regularized logistic regression performs similar to state-of-the-art automated machine learning (AutoML) frameworks (AutoPrognosis, AutoGluon) and off-the-shelf deep neural networks (TabPFN, HyperFast) on the majority of the benchmark datasets. We therefore recommend to consider logistic regression as the first choice for data-scarce applications with tabular data and provide practitioners with best practices for further method selection.

Cost-Sensitive Best Subset Selection for Logistic Regression: A Mixed-Integer Conic Optimization Perspective

A key challenge in machine learning is to design interpretable models that can reduce their inputs to the best subset for making transparent predictions, especially in the clinical domain. In this work, we propose a certifiably optimal feature selection procedure for logistic regression from a mixed-integer conic optimization perspective that can take an auxiliary cost to obtain features into account. Based on an extensive review of the literature, we carefully create a synthetic dataset generator for clinical prognostic model research. This allows us to systematically evaluate different heuristic and optimal cardinality- and budget-constrained feature selection procedures. The analysis shows key limitations of the methods for the low-data regime and when confronted with label noise. Our paper not only provides empirical recommendations for suitable methods and dataset designs, but also paves the way for future research in the area of meta-learning.

CAD Models to Real-World Images: A Practical Approach to Unsupervised Domain Adaptation in Industrial Object Classification

In this paper, we systematically analyze unsupervised domain adaptation pipelines for object classification in a challenging industrial setting. In contrast to standard natural object benchmarks existing in the field, our results highlight the most important design choices when only category-labeled CAD models are available but classification needs to be done with real-world images. Our domain adaptation pipeline achieves SoTA performance on the VisDA benchmark, but more importantly, drastically improves recognition performance on our new open industrial dataset comprised of 102 mechanical parts. We conclude with a set of guidelines that are relevant for practitioners needing to apply state-of-the-art unsupervised domain adaptation in practice. Our code is available at https://github.com/dritter-bht/synthnet-transfer-learning.

Evaluating Zero-cost Active Learning for Object Detection

Object detection requires substantial labeling effort for learning robust models. Active learning can reduce this effort by intelligently selecting relevant examples to be annotated. However, selecting these examples properly without introducing a sampling bias with a negative impact on the generalization performance is not straightforward and most active learning techniques can not hold their promises on real-world benchmarks. In our evaluation paper, we focus on active learning techniques without a computational overhead besides inference, something we refer to as zero-cost active learning. In particular, we show that a key ingredient is not only the score on a bounding box level but also the technique used for aggregating the scores for ranking images. We outline our experimental setup and also discuss practical considerations when using active learning for object detection.

Every Annotation Counts: Multi-label Deep Supervision for Medical Image Segmentation

Pixel-wise segmentation is one of the most data and annotation hungry tasks in our field. Providing representative and accurate annotations is often mission-critical especially for challenging medical applications. In this paper, we propose a semi-weakly supervised segmentation algorithm to overcome this barrier. Our approach is based on a new formulation of deep supervision and student-teacher model and allows for easy integration of different supervision signals. In contrast to previous work, we show that care has to be taken how deep supervision is integrated in lower layers and we present multi-label deep supervision as the most important secret ingredient for success. With our novel training regime for segmentation that flexibly makes use of images that are either fully labeled, marked with bounding boxes, just global labels, or not at all, we are able to cut the requirement for expensive labels by 94.22% - narrowing the gap to the best fully supervised baseline to only 5% mean IoU. Our approach is validated by extensive experiments on retinal fluid segmentation and we provide an in-depth analysis of the anticipated effect each annotation type can have in boosting segmentation performance.

Detecting Regions of Maximal Divergence for Spatio-Temporal Anomaly Detection

Automatic detection of anomalies in space- and time-varying measurements is an important tool in several fields, e.g., fraud detection, climate analysis, or healthcare monitoring. We present an algorithm for detecting anomalous regions in multivariate spatio-temporal time-series, which allows for spotting the interesting parts in large amounts of data, including video and text data. In opposition to existing techniques for detecting isolated anomalous data points, we propose the "Maximally Divergent Intervals" (MDI) framework for unsupervised detection of coherent spatial regions and time intervals characterized by a high Kullback-Leibler divergence compared with all other data given. In this regard, we define an unbiased Kullback-Leibler divergence that allows for ranking regions of different size and show how to enable the algorithm to run on large-scale data sets in reasonable time using an interval proposal technique. Experiments on both synthetic and real data from various domains, such as climate analysis, video surveillance, and text forensics, demonstrate that our method is widely applicable and a valuable tool for finding interesting events in different types of data.

Her2 Challenge Contest: A Detailed Assessment of Automated Her2 Scoring Algorithms in Whole Slide Images of Breast Cancer Tissues

Evaluating expression of the Human epidermal growth factor receptor 2 (Her2) by visual examination of immunohistochemistry (IHC) on invasive breast cancer (BCa) is a key part of the diagnostic assessment of BCa due to its recognised importance as a predictive and prognostic marker in clinical practice. However, visual scoring of Her2 is subjective and consequently prone to inter-observer variability. Given the prognostic and therapeutic implications of Her2 scoring, a more objective method is required. In this paper, we report on a recent automated Her2 scoring contest, held in conjunction with the annual PathSoc meeting held in Nottingham in June 2016, aimed at systematically comparing and advancing the state-of-the-art Artificial Intelligence (AI) based automated methods for Her2 scoring. The contest dataset comprised of digitised whole slide images (WSI) of sections from 86 cases of invasive breast carcinoma stained with both Haematoxylin & Eosin (H&E) and IHC for Her2. The contesting algorithms automatically predicted scores of the IHC slides for an unseen subset of the dataset and the predicted scores were compared with the 'ground truth' (a consensus score from at least two experts). We also report on a simple Man vs Machine contest for the scoring of Her2 and show that the automated methods could beat the pathology experts on this contest dataset. This paper presents a benchmark for comparing the performance of automated algorithms for scoring of Her2. It also demonstrates the enormous potential of automated algorithms in assisting the pathologist with objective IHC scoring.

Generalized orderless pooling performs implicit salient matching

Most recent CNN architectures use average pooling as a final feature encoding step. In the field of fine-grained recognition, however, recent global representations like bilinear pooling offer improved performance. In this paper, we generalize average and bilinear pooling to "alpha-pooling", allowing for learning the pooling strategy during training. In addition, we present a novel way to visualize decisions made by these approaches. We identify parts of training images having the highest influence on the prediction of a given test image. It allows for justifying decisions to users and also for analyzing the influence of semantic parts. For example, we can show that the higher capacity VGG16 model focuses much more on the bird's head than, e.g., the lower-capacity VGG-M model when recognizing fine-grained bird categories. Both contributions allow us to analyze the difference when moving between average and bilinear pooling. In addition, experiments show that our generalized approach can outperform both across a variety of standard datasets.

Fast Learning and Prediction for Object Detection using Whitened CNN Features

We combine features extracted from pre-trained convolutional neural networks (CNNs) with the fast, linear Exemplar-LDA classifier to get the advantages of both: the high detection performance of CNNs, automatic feature engineering, fast model learning from few training samples and efficient sliding-window detection. The Adaptive Real-Time Object Detection System (ARTOS) has been refactored broadly to be used in combination with Caffe for the experimental studies reported in this work.

Automatic Classification of Cancerous Tissue in Laserendomicroscopy Images of the Oral Cavity using Deep Learning

Oral Squamous Cell Carcinoma (OSCC) is a common type of cancer of the oral epithelium. Despite their high impact on mortality, sufficient screening methods for early diagnosis of OSCC often lack accuracy and thus OSCCs are mostly diagnosed at a late stage. Early detection and accurate outline estimation of OSCCs would lead to a better curative outcome and an reduction in recurrence rates after surgical treatment. Confocal Laser Endomicroscopy (CLE) records sub-surface micro-anatomical images for in vivo cell structure analysis. Recent CLE studies showed great prospects for a reliable, real-time ultrastructural imaging of OSCC in situ. We present and evaluate a novel automatic approach for a highly accurate OSCC diagnosis using deep learning technologies on CLE images. The method is compared against textural feature-based machine learning approaches that represent the current state of the art. For this work, CLE image sequences (7894 images) from patients diagnosed with OSCC were obtained from 4 specific locations in the oral cavity, including the OSCC lesion. The present approach is found to outperform the state of the art in CLE image recognition with an area under the curve (AUC) of 0.96 and a mean accuracy of 88.3% (sensitivity 86.6%, specificity 90%).