Enhancing Dimension-Reduced Scatter Plots with Class and Feature Centroids

Dimension reduction is increasingly applied to high-dimensional biomedical data to improve its interpretability. When datasets are reduced to two dimensions, each observation is assigned an x and y coordinates and is represented as a point on a scatter plot. A significant challenge lies in interpreting the meaning of the x and y axes due to the complexities inherent in dimension reduction. This study addresses this challenge by using the x and y coordinates derived from dimension reduction to calculate class and feature centroids, which can be overlaid onto the scatter plots. This method connects the low-dimension space to the original high-dimensional space. We illustrate the utility of this approach with data derived from the phenotypes of three neurogenetic diseases and demonstrate how the addition of class and feature centroids increases the interpretability of scatter plots.

Incremental cluster validity index-guided online learning for performance and robustness to presentation order

In streaming data applications incoming samples are processed and discarded, therefore, intelligent decision-making is crucial for the performance of lifelong learning systems. In addition, the order in which samples arrive may heavily affect the performance of online (and offline) incremental learners. The recently introduced incremental cluster validity indices (iCVIs) provide valuable aid in addressing such class of problems. Their primary use-case has been cluster quality monitoring; nonetheless, they have been very recently integrated in a streaming clustering method to assist the clustering task itself. In this context, the work presented here introduces the first adaptive resonance theory (ART)-based model that uses iCVIs for unsupervised and semi-supervised online learning. Moreover, it shows for the first time how to use iCVIs to regulate ART vigilance via an iCVI-based match tracking mechanism. The model achieves improved accuracy and robustness to ordering effects by integrating an online iCVI framework as module B of a topological adaptive resonance theory predictive mapping (TopoARTMAP) -- thereby being named iCVI-TopoARTMAP -- and by employing iCVI-driven post-processing heuristics at the end of each learning step. The online iCVI framework provides assignments of input samples to clusters at each iteration in accordance to any of several iCVIs. The iCVI-TopoARTMAP maintains useful properties shared by ARTMAP models, such as stability, immunity to catastrophic forgetting, and the many-to-one mapping capability via the map field module. The performance (unsupervised and semi-supervised) and robustness to presentation order (unsupervised) of iCVI-TopoARTMAP were evaluated via experiments with a synthetic data set and deep embeddings of a real-world face image data set.

iCVI-ARTMAP: Accelerating and improving clustering using adaptive resonance theory predictive mapping and incremental cluster validity indices

This paper presents an adaptive resonance theory predictive mapping (ARTMAP) model which uses incremental cluster validity indices (iCVIs) to perform unsupervised learning, namely iCVI-ARTMAP. Incorporating iCVIs to the decision-making and many-to-one mapping capabilities of ARTMAP can improve the choices of clusters to which samples are incrementally assigned. These improvements are accomplished by intelligently performing the operations of swapping sample assignments between clusters, splitting and merging clusters, and caching the values of variables when iCVI values need to be recomputed. Using recursive formulations enables iCVI-ARTMAP to considerably reduce the computational burden associated with cluster validity index (CVI)-based offline clustering. Depending on the iCVI and the data set, it can achieve running times up to two orders of magnitude shorter than when using batch CVI computations. In this work, the incremental versions of Calinski-Harabasz, WB-index, Xie-Beni, Davies-Bouldin, Pakhira-Bandyopadhyay-Maulik, and negentropy increment were integrated into fuzzy ARTMAP. Experimental results show that, with proper choice of iCVI, iCVI-ARTMAP outperformed fuzzy adaptive resonance theory (ART), dual vigilance fuzzy ART, kmeans, spectral clustering, Gaussian mixture models and hierarchical agglomerative clustering algorithms in most of the synthetic benchmark data sets. It also performed competitively on real world image benchmark data sets when clustering on projections and on latent spaces generated by a deep clustering model. Naturally, the performance of iCVI-ARTMAP is subject to the selected iCVI and its suitability to the data at hand; fortunately, it is a general model wherein other iCVIs can be easily embedded.

StarCraft II Build Order Optimization using Deep Reinforcement Learning and Monte-Carlo Tree Search

The real-time strategy game of StarCraft II has been posed as a challenge for reinforcement learning by Google's DeepMind. This study examines the use of an agent based on the Monte-Carlo Tree Search algorithm for optimizing the build order in StarCraft II, and discusses how its performance can be improved even further by combining it with a deep reinforcement learning neural network. The experimental results accomplished using Monte-Carlo Tree Search achieves a score similar to a novice human player by only using very limited time and computational resources, which paves the way to achieving scores comparable to those of a human expert by combining it with the use of deep reinforcement learning.

Survey of Privacy-Preserving Collaborative Filtering

Collaborative filtering recommendation systems provide recommendations to users based on their own past preferences, as well as those of other users who share similar interests. The use of recommendation systems has grown widely in recent years, helping people choose which movies to watch, books to read, and items to buy. However, users are often concerned about their privacy when using such systems, and many users are reluctant to provide accurate information to most online services. Privacy-preserving collaborative filtering recommendation systems aim to provide users with accurate recommendations while maintaining certain guarantees about the privacy of their data. This survey examines the recent literature in privacy-preserving collaborative filtering, providing a broad perspective of the field and classifying the key contributions in the literature using two different criteria: the type of vulnerability they address and the type of approach they use to solve it.

A Survey of Adaptive Resonance Theory Neural Network Models for Engineering Applications

This survey samples from the ever-growing family of adaptive resonance theory (ART) neural network models used to perform the three primary machine learning modalities, namely, unsupervised, supervised and reinforcement learning. It comprises a representative list from classic to modern ART models, thereby painting a general picture of the architectures developed by researchers over the past 30 years. The learning dynamics of these ART models are briefly described, and their distinctive characteristics such as code representation, long-term memory and corresponding geometric interpretation are discussed. Useful engineering properties of ART (speed, configurability, explainability, parallelization and hardware implementation) are examined along with current challenges. Finally, a compilation of online software libraries is provided. It is expected that this overview will be helpful to new and seasoned ART researchers.

Incremental Cluster Validity Indices for Hard Partitions: Extensions and Comparative Study

Validation is one of the most important aspects of clustering, but most approaches have been batch methods. Recently, interest has grown in providing incremental alternatives. This paper extends the incremental cluster validity index (iCVI) family to include incremental versions of Calinski-Harabasz (iCH), I index and Pakhira-Bandyopadhyay-Maulik (iI and iPBM), Silhouette (iSIL), Negentropy Increment (iNI), Representative Cross Information Potential (irCIP) and Representative Cross Entropy (irH), and Conn_Index (iConn_Index). Additionally, the effect of under- and over-partitioning on the behavior of these six iCVIs, the Partition Separation (PS) index, as well as two other recently developed iCVIs (incremental Xie-Beni (iXB) and incremental Davies-Bouldin (iDB)) was examined through a comparative study. Experimental results using fuzzy adaptive resonance theory (ART)-based clustering methods showed that while evidence of most under-partitioning cases could be inferred from the behaviors of all these iCVIs, over-partitioning was found to be a more challenging scenario indicated only by the iConn_Index. The expansion of incremental validity indices provides significant novel opportunities for assessing and interpreting the results of unsupervised learning.