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Lerna: Transformer Architectures for Configuring Error Correction Tools for Short- and Long-Read Genome Sequencing


Dec 19, 2021
Atul Sharma, Pranjal Jain, Ashraf Mahgoub, Zihan Zhou, Kanak Mahadik, Somali Chaterji

* 26 pages, 5 figures, 10 tables. Accepted to BMC Bioinformatics 

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JANUS: Benchmarking Commercial and Open-Source Cloud and Edge Platforms for Object and Anomaly Detection Workloads


Dec 09, 2020
Karthick Shankar, Pengcheng Wang, Ran Xu, Ashraf Mahgoub, Somali Chaterji

* "JANUS: Benchmarking Commercial and Open-Source Cloud and Edge Platforms for Object and Anomaly Detection Workloads," IEEE International Conference on Cloud Computing (IEEE Cloud), pp. 1--10, Oct 18-24, 2020 
* Appeared at the IEEE Cloud 2020 conference. 10 pages 

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ATHENA: Automated Tuning of Genomic Error Correction Algorithms using Language Models


Dec 30, 2018
Mustafa Abdallah, Ashraf Mahgoub, Saurabh Bagchi, Somali Chaterji

* 10 main pages, 7 references and appendices 

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