Extracting Patterns of Chemical Information from Differential Mobility Spectrometry Measurements under Varying Conditions of Humidity and Temperature

Differential Mobility Spectrometry (DMS), also known as Field Asymmetric Ion Mobility Spectrometry, is a rapid and affordable technology for extracting information from gas phase samples containing complex volatile organic compounds, and can therefore be used for analyzing surgical smoke. One obstacle to its widespread application is the dependence of DMS measurements on humidity and, to a lesser degree, temperature, making comparison of data measured under different environmental conditions arbitrary. The commonly used solution is to regulate these environmental conditions to some predefined humidity and temperature levels. However, this approach is often unfeasible or even impossible. Therefore, in this paper we analyzed a dataset of 1,852 DMS measurements of surgical smoke evaporated from porcine adipose and muscle tissue to get an understanding of the impact of varying humidity and temperature on DMS measurements. Our analysis confirmed clear dependence of the measurements on these two factors. To overcome this challenge, we fitted regression models to raw and normalized DMS measurement data. Subsequently, these models were used for estimating DMS measurements for known tissue types based on recorded humidity and temperatures. Our test suggests that it is possible to estimate DMS measurements of surgical smoke from porcine adipose and muscle tissue under specific environmental conditions by standardizing DMS measurements separation voltage-wise and training multivariate regression models on the normalized data, which is the first step in removing the need for standardized measurement conditions.

Classification of Volatile Organic Compounds by Differential Mobility Spectrometry Based on Continuity of Alpha Curves

Background: Classification of volatile organic compounds (VOCs) is of interest in many fields. Examples include but are not limited to medicine, detection of explosives, and food quality control. Measurements collected with electronic noses can be used for classification and analysis of VOCs. One type of electronic noses that has seen considerable development in recent years is Differential Mobility Spectrometry (DMS). DMS yields measurements that are visualized as dispersion plots that contain traces, also known as alpha curves. Current methods used for analyzing DMS dispersion plots do not usually utilize the information stored in the continuity of these traces, which suggests that alternative approaches should be investigated. Results: In this work, for the first time, dispersion plots were interpreted as a series of measurements evolving sequentially. Thus, it was hypothesized that time-series classification algorithms can be effective for classification and analysis of dispersion plots. An extensive dataset of 900 dispersion plots for five chemicals measured at five flow rates and two concentrations was collected. The data was used to analyze the classification performance of six algorithms. According to our hypothesis, the highest classification accuracy of 88\% was achieved by a Long-Short Term Memory neural network, which supports our hypothesis. Significance: A new concept for approaching classification tasks of dispersion plots is presented and compared with other well-known classification algorithms. This creates a new angle of view for analysis and classification of the dispersion plots. In addition, a new dataset of dispersion plots is openly shared to public.

A benchmark for computational analysis of animal behavior, using animal-borne tags

Animal-borne sensors ('bio-loggers') can record a suite of kinematic and environmental data, which can elucidate animal ecophysiology and improve conservation efforts. Machine learning techniques are useful for interpreting the large amounts of data recorded by bio-loggers, but there exists no standard for comparing the different machine learning techniques in this domain. To address this, we present the Bio-logger Ethogram Benchmark (BEBE), a collection of datasets with behavioral annotations, standardized modeling tasks, and evaluation metrics. BEBE is to date the largest, most taxonomically diverse, publicly available benchmark of this type, and includes 1654 hours of data collected from 149 individuals across nine taxa. We evaluate the performance of ten different machine learning methods on BEBE, and identify key challenges to be addressed in future work. Datasets, models, and evaluation code are made publicly available at https://github.com/earthspecies/BEBE, to enable community use of BEBE as a point of comparison in methods development.

Signal-to-noise ratio is more important than sampling rate in beat-to-beat interval estimation from optical sensors

Photoplethysmographic Imaging (PPGI) allows the determination of pulse rate variability from sequential beat-to-beat intervals (BBI) and pulse wave velocity from spatially resolved recorded pulse waves. In either case, sufficient temporal accuracy is essential. The presented work investigates the temporal accuracy of BBI estimation from photoplethysmographic signals. Within comprehensive numerical simulation, we systematically assess the impact of sampling rate, signal-to-noise ratio (SNR), and beat-to-beat shape variations on the root mean square error (RMSE) between real and estimated BBI. Our results show that at sampling rates beyond 14 Hz only small errors exist when interpolation is used. For example, the average RMSE is 3 ms for a sampling rate of 14 Hz and an SNR of 18 dB. Further increasing the sampling rate only results in marginal improvements, e.g. more than tripling the sampling rate to 50 Hz reduces the error by approx. 14%. The most important finding relates to the SNR, which is shown to have a much stronger influence on the error than the sampling rate. For example, increasing the SNR from 18 dB to 24 dB at 14 Hz sampling rate reduced the error by almost 50% to 1.5 ms. Subtle beat-to-beat shape variations, moreover, increase the error decisively by up to 800%. Our results are highly relevant in three regards: first, they partially explain different results in the literature on minimum sampling rates. Second, they emphasize the importance to consider SNR and possibly shape variation in investigations on the minimal sampling rate. Third, they underline the importance of appropriate processing techniques to increase SNR. Importantly, though our motivation is PPGI, the presented work immediately applies to contact PPG and PPG in other settings such as wearables. To enable further investigations, we make the scripts used in modelling and simulation freely available.