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BERTology Meets Biology: Interpreting Attention in Protein Language Models

Jul 13, 2020
Jesse Vig, Ali Madani, Lav R. Varshney, Caiming Xiong, Richard Socher, Nazneen Fatema Rajani


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ProGen: Language Modeling for Protein Generation

Mar 08, 2020
Ali Madani, Bryan McCann, Nikhil Naik, Nitish Shirish Keskar, Namrata Anand, Raphael R. Eguchi, Po-Ssu Huang, Richard Socher


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ProDyn0: Inferring calponin homology domain stretching behavior using graph neural networks

Oct 22, 2019
Ali Madani, Cyna Shirazinejad, Jia Rui Ong, Hengameh Shams, Mohammad Mofrad

* ICLR 2019: Representation learning on graphs and manifolds 
* 8 pages, 2 figures, 2 tables 

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Bimodal network architectures for automatic generation of image annotation from text

Sep 05, 2018
Mehdi Moradi, Ali Madani, Yaniv Gur, Yufan Guo, Tanveer Syeda-Mahmood

* Lecture Notes in Computer Science (LNCS 11070), Proceedings of Medical Image Computing & Computer Assisted Intervention (MICCAI 2018) 
* Accepted to MICCAI 2018, LNCS 11070 

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Fast and accurate classification of echocardiograms using deep learning

Jun 27, 2017
Ali Madani, Ramy Arnaout, Mohammad Mofrad, Rima Arnaout

* 31 pages, 8 figures 

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