LRDB: LSTM Raw data DNA Base-caller based on long-short term models in an active learning environment

The first important step in extracting DNA characters is using the output data of MinION devices in the form of electrical current signals. Various cutting-edge base callers use this data to detect the DNA characters based on the input. In this paper, we discuss several shortcomings of prior base callers in the case of time-critical applications, privacy-aware design, and the problem of catastrophic forgetting. Next, we propose the LRDB model, a lightweight open-source model for private developments with a better read-identity (0.35% increase) for the target bacterial samples in the paper. We have limited the extent of training data and benefited from the transfer learning algorithm to make the active usage of the LRDB viable in critical applications. Henceforth, less training time for adapting to new DNA samples (in our case, Bacterial samples) is needed. Furthermore, LRDB can be modified concerning the user constraints as the results show a negligible accuracy loss in case of using fewer parameters. We have also assessed the noise-tolerance property, which offers about a 1.439% decline in accuracy for a 15dB noise injection, and the performance metrics show that the model executes in a medium speed range compared with current cutting-edge models.

TriPose: A Weakly-Supervised 3D Human Pose Estimation via Triangulation from Video

Estimating 3D human poses from video is a challenging problem. The lack of 3D human pose annotations is a major obstacle for supervised training and for generalization to unseen datasets. In this work, we address this problem by proposing a weakly-supervised training scheme that does not require 3D annotations or calibrated cameras. The proposed method relies on temporal information and triangulation. Using 2D poses from multiple views as the input, we first estimate the relative camera orientations and then generate 3D poses via triangulation. The triangulation is only applied to the views with high 2D human joint confidence. The generated 3D poses are then used to train a recurrent lifting network (RLN) that estimates 3D poses from 2D poses. We further apply a multi-view re-projection loss to the estimated 3D poses and enforce the 3D poses estimated from multi-views to be consistent. Therefore, our method relaxes the constraints in practice, only multi-view videos are required for training, and is thus convenient for in-the-wild settings. At inference, RLN merely requires single-view videos. The proposed method outperforms previous works on two challenging datasets, Human3.6M and MPI-INF-3DHP. Codes and pretrained models will be publicly available.