We study the problem of learning neural classifiers in a neurosymbolic setting where the hidden gold labels of input instances must satisfy a logical formula. Learning in this setting proceeds by first computing (a subset of) the possible combinations of labels that satisfy the formula and then computing a loss using those combinations and the classifiers' scores. One challenge is that the space of label combinations can grow exponentially, making learning difficult. We propose a technique that prunes this space by exploiting the intuition that instances with similar latent representations are likely to share the same label. While this intuition has been widely used in weakly supervised learning, its application in our setting is challenging due to label dependencies imposed by logical constraints. We formulate the pruning process as an integer linear program that discards inconsistent label combinations while respecting logical structure. Our approach, CLIPPER, is orthogonal to existing training algorithms and can be seamlessly integrated with them. Across 16 benchmarks over complex neurosymbolic tasks, we demonstrate that CLIPPER boosts the performance of state-of-the-art neurosymbolic engines like Scallop, Dolphin, and ISED by up to 48%, 53%, and 8%, leading to state-of-the-art accuracies.