Whole-aircraft diagnosis for general aviation faces threefold challenges: data uncertainty, task heterogeneity, and computational inefficiency. Existing end-to-end approaches uniformly model health discrimination and fault characterization, overlooking intrinsic receptive field conflicts between global context modeling and local feature extraction, while incurring prohibitive training costs under severe class imbalance. To address these, this study proposes the Diagnosis Decomposition Framework (DDF), explicitly decoupling diagnosis into Anomaly Detection (AD) and Fault Classification (FC) subtasks via the Long-Micro Scale Diagnostician (LMSD). Employing a "long-range global screening and micro-scale local precise diagnosis" strategy, LMSD utilizes Convolutional Tokenizer with Multi-Head Self-Attention (ConvTokMHSA) for global operational pattern discrimination and Multi-Micro Kernel Network (MMK Net) for local fault feature extraction. Decoupled training separates "large-sample lightweight" and "small-sample complex" optimization pathways, significantly reducing computational overhead. Concurrently, Keyness Extraction Layer (KEL) via knowledge distillation furnishes physically traceable explanations for two-stage decisions, materializing interpretability-by-design. Experiments on the NGAFID real-world aviation dataset demonstrate approximately 4-8% improvement in Multi-Class Weighted Penalty Metric (MCWPM) over baselines with substantially reduced training time, validating comprehensive advantages in task adaptability, interpretability, and efficiency. This provides a deployable methodology for general aviation health management.