A Novel Large-scale Crop Dataset and Dual-stream Transformer Method for Fine-grained Hierarchical Crop Classification from Integrated Hyperspectral EnMAP Data and Multispectral Sentinel-2 Time Series

Fine-grained crop classification is crucial for precision agriculture and food security monitoring. It requires simultaneous capture of both phenological dynamics (obtained from multi-temporal satellite data like Sentinel-2) and subtle spectral variations (demanding nanometer-scale spectral resolution from hyperspectral imagery). Research combining these two modalities remains scarce currently due to challenges in hyperspectral data acquisition and crop types annotation costs. To address these issues, we construct a hierarchical hyperspectral crop dataset (H2Crop) by integrating 30m-resolution EnMAP hyperspectral data with Sentinel-2 time series. With over one million annotated field parcels organized in a four-tier crop taxonomy, H2Crop establishes a vital benchmark for fine-grained agricultural crop classification and hyperspectral image processing. We propose a dual-stream Transformer architecture that synergistically processes these modalities. It coordinates two specialized pathways: a spectral-spatial Transformer extracts fine-grained signatures from hyperspectral EnMAP data, while a temporal Swin Transformer extracts crop growth patterns from Sentinel-2 time series. The designed hierarchy classification heads with hierarchical fusion then simultaneously delivers multi-level classification across all taxonomic tiers. Experiments demonstrate that adding hyperspectral EnMAP data to Sentinel-2 time series yields a 4.2% average F1-scores improvement (peaking at 6.3%). Extensive comparisons also confirming our method's higher accuracy over existing deep learning approaches for crop type classification and the consistent benefits of hyperspectral data across varying temporal windows and crop change scenarios. Codes and dataset will be available at https://github.com/flyakon/H2Crop and www.glass.hku.hk Keywords: Crop type classification, precision agriculture, remote sensing, deep learning, hyperspectral data, Sentinel-2 time series, fine-grained crops