VOLT: Volumetric Wide-Field Microscopy via 3D-Native Probabilistic Transport

Three-dimensional (3D) wide-field fluorescence microscopy is a widely used modality for volumetric imaging, but suffers from characteristic out-of-focus blur. Existing reconstruction methods either struggle to operate on high-dimensional volumes or fail to provide credibility characterization of the reconstruction. In this work, we introduce Volumetric Transport (VOLT), a 3D-native probabilistic framework for wide-field fluorescence microscopy reconstruction. VOLT combines a transport-based formulation that maps degraded measurements to clean volumes via stochastic interpolants with a 3D-native anisotropic network that separates lateral and axial processing. This design operates directly in voxel space and achieves improved scalability to large volumes without relying on slice-wise approximations. We develop both stochastic (SDE) and deterministic (ODE) variants within the same framework. We validate VOLT on simulated wide-field microscopy datasets. Our results show that VOLT significantly improves reconstruction quality in both lateral and axial directions while providing voxel-wise credibility estimates.

End-to-end reconstruction of OCT optical properties and speckle-reduced structural intensity via physics-based learning

Inverse scattering in optical coherence tomography (OCT) seeks to recover both structural images and intrinsic tissue optical properties, including refractive index, scattering coefficient, and anisotropy. This inverse problem is challenging due to attenuation, speckle noise, and strong coupling among parameters. We propose a regularized end-to-end deep learning framework that jointly reconstructs optical parameter maps and speckle-reduced OCT structural intensity for layer visualization. Trained with Monte Carlo-simulated ground truth, our network incorporates a physics-based OCT forward model that generates predicted signals from the estimated parameters, providing physics-consistent supervision for parameter recovery and artifact suppression. Experiments on the synthetic corneal OCT dataset demonstrate robust optical map recovery under noise, improved resolution, and enhanced structural fidelity. This approach enables quantitative multi-parameter tissue characterization and highlights the benefit of combining physics-informed modeling with deep learning for computational OCT.

Super-Resolution and Denoising of Corneal B-Scan OCT Imaging Using Diffusion Model Plug-and-Play Priors

Optical coherence tomography (OCT) is pivotal in corneal imaging for both surgical planning and diagnosis. However, high-speed acquisitions often degrade spatial resolution and increase speckle noise, posing challenges for accurate interpretation. We propose an advanced super-resolution framework leveraging diffusion model plug-and-play (PnP) priors to achieve 4x spatial resolution enhancement alongside effective denoising of OCT Bscan images. Our approach formulates reconstruction as a principled Bayesian inverse problem, combining Markov chain Monte Carlo sampling with pretrained generative priors to enforce anatomical consistency. We comprehensively validate the framework using \emph{in vivo} fisheye corneal datasets, to assess robustness and scalability under diverse clinical settings. Comparative experiments against bicubic interpolation, conventional supervised U-Net baselines, and alternative diffusion priors demonstrate that our method consistently yields more precise anatomical structures, improved delineation of corneal layers, and superior noise suppression. Quantitative results show state-of-the-art performance in peak signal-to-noise ratio, structural similarity index, and perceptual metrics. This work highlights the potential of diffusion-driven plug-and-play reconstruction to deliver high-fidelity, high-resolution OCT imaging, supporting more reliable clinical assessments and enabling advanced image-guided interventions. Our findings suggest the approach can be extended to other biomedical imaging modalities requiring robust super-resolution and denoising.

PSI3D: Plug-and-Play 3D Stochastic Inference with Slice-wise Latent Diffusion Prior

Diffusion models are highly expressive image priors for Bayesian inverse problems. However, most diffusion models cannot operate on large-scale, high-dimensional data due to high training and inference costs. In this work, we introduce a Plug-and-play algorithm for 3D stochastic inference with latent diffusion prior (PSI3D) to address massive ($1024\times 1024\times 128$) volumes. Specifically, we formulate a Markov chain Monte Carlo approach to reconstruct each two-dimensional (2D) slice by sampling from a 2D latent diffusion model. To enhance inter-slice consistency, we also incorporate total variation (TV) regularization stochastically along the concatenation axis. We evaluate our performance on optical coherence tomography (OCT) super-resolution. Our method significantly improves reconstruction quality for large-scale scientific imaging compared to traditional and learning-based baselines, while providing robust and credible reconstructions.

Super-Resolution Optical Coherence Tomography Using Diffusion Model-Based Plug-and-Play Priors

We propose an OCT super-resolution framework based on a plug-and-play diffusion model (PnP-DM) to reconstruct high-quality images from sparse measurements (OCT B-mode corneal images). Our method formulates reconstruction as an inverse problem, combining a diffusion prior with Markov chain Monte Carlo sampling for efficient posterior inference. We collect high-speed under-sampled B-mode corneal images and apply a deep learning-based up-sampling pipeline to build realistic training pairs. Evaluations on in vivo and ex vivo fish-eye corneal models show that PnP-DM outperforms conventional 2D-UNet baselines, producing sharper structures and better noise suppression. This approach advances high-fidelity OCT imaging in high-speed acquisition for clinical applications.

Neural Inverse Scattering with Score-based Regularization

Inverse scattering is a fundamental challenge in many imaging applications, ranging from microscopy to remote sensing. Solving this problem often requires jointly estimating two unknowns -- the image and the scattering field inside the object -- necessitating effective image prior to regularize the inference. In this paper, we propose a regularized neural field (NF) approach which integrates the denoising score function used in score-based generative models. The neural field formulation offers convenient flexibility to performing joint estimation, while the denoising score function imposes the rich structural prior of images. Our results on three high-contrast simulated objects show that the proposed approach yields a better imaging quality compared to the state-of-the-art NF approach, where regularization is based on total variation.