Is in-domain data beneficial in transfer learning for landmarks detection in x-ray images?

In recent years, deep learning has emerged as a promising technique for medical image analysis. However, this application domain is likely to suffer from a limited availability of large public datasets and annotations. A common solution to these challenges in deep learning is the usage of a transfer learning framework, typically with a fine-tuning protocol, where a large-scale source dataset is used to pre-train a model, further fine-tuned on the target dataset. In this paper, we present a systematic study analyzing whether the usage of small-scale in-domain x-ray image datasets may provide any improvement for landmark detection over models pre-trained on large natural image datasets only. We focus on the multi-landmark localization task for three datasets, including chest, head, and hand x-ray images. Our results show that using in-domain source datasets brings marginal or no benefit with respect to an ImageNet out-of-domain pre-training. Our findings can provide an indication for the development of robust landmark detection systems in medical images when no large annotated dataset is available.

Fine-tuning or top-tuning? Transfer learning with pretrained features and fast kernel methods

The impressive performances of deep learning architectures is associated to massive increase of models complexity. Millions of parameters need be tuned, with training and inference time scaling accordingly. But is massive fine-tuning necessary? In this paper, focusing on image classification, we consider a simple transfer learning approach exploiting pretrained convolutional features as input for a fast kernel method. We refer to this approach as top-tuning, since only the kernel classifier is trained. By performing more than 2500 training processes we show that this top-tuning approach provides comparable accuracy w.r.t. fine-tuning, with a training time that is between one and two orders of magnitude smaller. These results suggest that top-tuning provides a useful alternative to fine-tuning in small/medium datasets, especially when training efficiency is crucial.

Efficient Unsupervised Learning for Plankton Images

Monitoring plankton populations in situ is fundamental to preserve the aquatic ecosystem. Plankton microorganisms are in fact susceptible of minor environmental perturbations, that can reflect into consequent morphological and dynamical modifications. Nowadays, the availability of advanced automatic or semi-automatic acquisition systems has been allowing the production of an increasingly large amount of plankton image data. The adoption of machine learning algorithms to classify such data may be affected by the significant cost of manual annotation, due to both the huge quantity of acquired data and the numerosity of plankton species. To address these challenges, we propose an efficient unsupervised learning pipeline to provide accurate classification of plankton microorganisms. We build a set of image descriptors exploiting a two-step procedure. First, a Variational Autoencoder (VAE) is trained on features extracted by a pre-trained neural network. We then use the learnt latent space as image descriptor for clustering. We compare our method with state-of-the-art unsupervised approaches, where a set of pre-defined hand-crafted features is used for clustering of plankton images. The proposed pipeline outperforms the benchmark algorithms for all the plankton datasets included in our analysis, providing better image embedding properties.