Sample selection with noise rate estimation in noise learning of medical image analysis

Deep learning techniques have demonstrated remarkable success in the field of medical image analysis. However, the existence of label noise within data significantly hampers its performance. In this paper, we introduce a novel noise-robust learning method which integrates noise rate estimation into sample selection approaches for handling noisy datasets. We first estimate the noise rate of a dataset with Linear Regression based on the distribution of loss values. Then, potentially noisy samples are excluded based on this estimated noise rate, and sparse regularization is further employed to improve the robustness of our deep learning model. Our proposed method is evaluated on five benchmark medical image classification datasets, including two datasets featuring 3D medical images. Experiments show that our method outperforms other existing noise-robust learning methods, especially when noise rate is very big.

DISYRE: Diffusion-Inspired SYnthetic REstoration for Unsupervised Anomaly Detection

Unsupervised Anomaly Detection (UAD) techniques aim to identify and localize anomalies without relying on annotations, only leveraging a model trained on a dataset known to be free of anomalies. Diffusion models learn to modify inputs $x$ to increase the probability of it belonging to a desired distribution, i.e., they model the score function $\nabla_x \log p(x)$. Such a score function is potentially relevant for UAD, since $\nabla_x \log p(x)$ is itself a pixel-wise anomaly score. However, diffusion models are trained to invert a corruption process based on Gaussian noise and the learned score function is unlikely to generalize to medical anomalies. This work addresses the problem of how to learn a score function relevant for UAD and proposes DISYRE: Diffusion-Inspired SYnthetic REstoration. We retain the diffusion-like pipeline but replace the Gaussian noise corruption with a gradual, synthetic anomaly corruption so the learned score function generalizes to medical, naturally occurring anomalies. We evaluate DISYRE on three common Brain MRI UAD benchmarks and substantially outperform other methods in two out of the three tasks.

ARIA: On the interaction between Architectures, Aggregation methods and Initializations in federated visual classification

Federated Learning (FL) is a collaborative training paradigm that allows for privacy-preserving learning of cross-institutional models by eliminating the exchange of sensitive data and instead relying on the exchange of model parameters between the clients and a server. Despite individual studies on how client models are aggregated, and, more recently, on the benefits of ImageNet pre-training, there is a lack of understanding of the effect the architecture chosen for the federation has, and of how the aforementioned elements interconnect. To this end, we conduct the first joint ARchitecture-Initialization-Aggregation study and benchmark ARIAs across a range of medical image classification tasks. We find that, contrary to current practices, ARIA elements have to be chosen together to achieve the best possible performance. Our results also shed light on good choices for each element depending on the task, the effect of normalisation layers, and the utility of SSL pre-training, pointing to potential directions for designing FL-specific architectures and training pipelines.

Contribution Evaluation in Federated Learning: Examining Current Approaches

Federated Learning (FL) has seen increasing interest in cases where entities want to collaboratively train models while maintaining privacy and governance over their data. In FL, clients with private and potentially heterogeneous data and compute resources come together to train a common model without raw data ever leaving their locale. Instead, the participants contribute by sharing local model updates, which, naturally, differ in quality. Quantitatively evaluating the worth of these contributions is termed the Contribution Evaluation (CE) problem. We review current CE approaches from the underlying mathematical framework to efficiently calculate a fair value for each client. Furthermore, we benchmark some of the most promising state-of-the-art approaches, along with a new one we introduce, on MNIST and CIFAR-10, to showcase their differences. Designing a fair and efficient CE method, while a small part of the overall FL system design, is tantamount to the mainstream adoption of FL.

MIM-OOD: Generative Masked Image Modelling for Out-of-Distribution Detection in Medical Images

Unsupervised Out-of-Distribution (OOD) detection consists in identifying anomalous regions in images leveraging only models trained on images of healthy anatomy. An established approach is to tokenize images and model the distribution of tokens with Auto-Regressive (AR) models. AR models are used to 1) identify anomalous tokens and 2) in-paint anomalous representations with in-distribution tokens. However, AR models are slow at inference time and prone to error accumulation issues which negatively affect OOD detection performance. Our novel method, MIM-OOD, overcomes both speed and error accumulation issues by replacing the AR model with two task-specific networks: 1) a transformer optimized to identify anomalous tokens and 2) a transformer optimized to in-paint anomalous tokens using masked image modelling (MIM). Our experiments with brain MRI anomalies show that MIM-OOD substantially outperforms AR models (DICE 0.458 vs 0.301) while achieving a nearly 25x speedup (9.5s vs 244s).