Glioma C6: A Novel Dataset for Training and Benchmarking Cell Segmentation

We present Glioma C6, a new open dataset for instance segmentation of glioma C6 cells, designed as both a benchmark and a training resource for deep learning models. The dataset comprises 75 high-resolution phase-contrast microscopy images with over 12,000 annotated cells, providing a realistic testbed for biomedical image analysis. It includes soma annotations and morphological cell categorization provided by biologists. Additional categorization of cells, based on morphology, aims to enhance the utilization of image data for cancer cell research. Glioma C6 consists of two parts: the first is curated with controlled parameters for benchmarking, while the second supports generalization testing under varying conditions. We evaluate the performance of several generalist segmentation models, highlighting their limitations on our dataset. Our experiments demonstrate that training on Glioma C6 significantly enhances segmentation performance, reinforcing its value for developing robust and generalizable models. The dataset is publicly available for researchers.

Hypernym Bias: Unraveling Deep Classifier Training Dynamics through the Lens of Class Hierarchy

We investigate the training dynamics of deep classifiers by examining how hierarchical relationships between classes evolve during training. Through extensive experiments, we argue that the learning process in classification problems can be understood through the lens of label clustering. Specifically, we observe that networks tend to distinguish higher-level (hypernym) categories in the early stages of training, and learn more specific (hyponym) categories later. We introduce a novel framework to track the evolution of the feature manifold during training, revealing how the hierarchy of class relations emerges and refines across the network layers. Our analysis demonstrates that the learned representations closely align with the semantic structure of the dataset, providing a quantitative description of the clustering process. Notably, we show that in the hypernym label space, certain properties of neural collapse appear earlier than in the hyponym label space, helping to bridge the gap between the initial and terminal phases of learning. We believe our findings offer new insights into the mechanisms driving hierarchical learning in deep networks, paving the way for future advancements in understanding deep learning dynamics.