Glioma C6: A Novel Dataset for Training and Benchmarking Cell Segmentation

We present Glioma C6, a new open dataset for instance segmentation of glioma C6 cells, designed as both a benchmark and a training resource for deep learning models. The dataset comprises 75 high-resolution phase-contrast microscopy images with over 12,000 annotated cells, providing a realistic testbed for biomedical image analysis. It includes soma annotations and morphological cell categorization provided by biologists. Additional categorization of cells, based on morphology, aims to enhance the utilization of image data for cancer cell research. Glioma C6 consists of two parts: the first is curated with controlled parameters for benchmarking, while the second supports generalization testing under varying conditions. We evaluate the performance of several generalist segmentation models, highlighting their limitations on our dataset. Our experiments demonstrate that training on Glioma C6 significantly enhances segmentation performance, reinforcing its value for developing robust and generalizable models. The dataset is publicly available for researchers.

Fast Adjustable Threshold For Uniform Neural Network Quantization

Neural network quantization procedure is the necessary step for porting of neural networks to mobile devices. Quantization allows accelerating the inference, reducing memory consumption and model size. It can be performed without fine-tuning using calibration procedure (calculation of parameters necessary for quantization), or it is possible to train the network with quantization from scratch. Training with quantization from scratch on the labeled data is rather long and resource-consuming procedure. Quantization of network without fine-tuning leads to accuracy drop because of outliers which appear during the calibration. In this article we suggest to simplify the quantization procedure significantly by introducing the trained scale factors for quantization thresholds. It allows speeding up the process of quantization with fine-tuning up to 8 epochs as well as reducing the requirements to the set of train images. By our knowledge, the proposed method allowed us to get the first public available quantized version of MNAS without significant accuracy reduction - 74.8% vs 75.3% for original full-precision network. Model and code are ready for use and available at: https://github.com/agoncharenko1992/FAT-fast_adjustable_threshold.