RodEpil: A Video Dataset of Laboratory Rodents for Seizure Detection and Benchmark Evaluation

We introduce a curated video dataset of laboratory rodents for automatic detection of convulsive events. The dataset contains short (10~s) top-down and side-view video clips of individual rodents, labeled at clip level as normal activity or seizure. It includes 10,101 negative samples and 2,952 positive samples collected from 19 subjects. We describe the data curation, annotation protocol and preprocessing pipeline, and report baseline experiments using a transformer-based video classifier (TimeSformer). Experiments employ five-fold cross-validation with strict subject-wise partitioning to prevent data leakage (no subject appears in more than one fold). Results show that the TimeSformer architecture enables discrimination between seizure and normal activity with an average F1-score of 97%. The dataset and baseline code are publicly released to support reproducible research on non-invasive, video-based monitoring in preclinical epilepsy research. RodEpil Dataset access - DOI: 10.5281/zenodo.17601357

Predicting Hypoxia in Brain Tumors from Multiparametric MRI

This research paper presents a novel approach to the prediction of hypoxia in brain tumors, using multi-parametric Magnetic Resonance Imaging (MRI). Hypoxia, a condition characterized by low oxygen levels, is a common feature of malignant brain tumors associated with poor prognosis. Fluoromisonidazole Positron Emission Tomography (FMISO PET) is a well-established method for detecting hypoxia in vivo, but it is expensive and not widely available. Our study proposes the use of MRI, a more accessible and cost-effective imaging modality, to predict FMISO PET signals. We investigate deep learning models (DL) trained on the ACRIN 6684 dataset, a resource that contains paired MRI and FMISO PET images from patients with brain tumors. Our trained models effectively learn the complex relationships between the MRI features and the corresponding FMISO PET signals, thereby enabling the prediction of hypoxia from MRI scans alone. The results show a strong correlation between the predicted and actual FMISO PET signals, with an overall PSNR score above 29.6 and a SSIM score greater than 0.94, confirming MRI as a promising option for hypoxia prediction in brain tumors. This approach could significantly improve the accessibility of hypoxia detection in clinical settings, with the potential for more timely and targeted treatments.