CASIMIR: A Corpus of Scientific Articles enhanced with Multiple Author-Integrated Revisions

Writing a scientific article is a challenging task as it is a highly codified and specific genre, consequently proficiency in written communication is essential for effectively conveying research findings and ideas. In this article, we propose an original textual resource on the revision step of the writing process of scientific articles. This new dataset, called CASIMIR, contains the multiple revised versions of 15,646 scientific articles from OpenReview, along with their peer reviews. Pairs of consecutive versions of an article are aligned at sentence-level while keeping paragraph location information as metadata for supporting future revision studies at the discourse level. Each pair of revised sentences is enriched with automatically extracted edits and associated revision intention. To assess the initial quality on the dataset, we conducted a qualitative study of several state-of-the-art text revision approaches and compared various evaluation metrics. Our experiments led us to question the relevance of the current evaluation methods for the text revision task.

Probing the Information Encoded in Neural-based Acoustic Models of Automatic Speech Recognition Systems

Deep learning architectures have made significant progress in terms of performance in many research areas. The automatic speech recognition (ASR) field has thus benefited from these scientific and technological advances, particularly for acoustic modeling, now integrating deep neural network architectures. However, these performance gains have translated into increased complexity regarding the information learned and conveyed through these black-box architectures. Following many researches in neural networks interpretability, we propose in this article a protocol that aims to determine which and where information is located in an ASR acoustic model (AM). To do so, we propose to evaluate AM performance on a determined set of tasks using intermediate representations (here, at different layer levels). Regarding the performance variation and targeted tasks, we can emit hypothesis about which information is enhanced or perturbed at different architecture steps. Experiments are performed on both speaker verification, acoustic environment classification, gender classification, tempo-distortion detection systems and speech sentiment/emotion identification. Analysis showed that neural-based AMs hold heterogeneous information that seems surprisingly uncorrelated with phoneme recognition, such as emotion, sentiment or speaker identity. The low-level hidden layers globally appears useful for the structuring of information while the upper ones would tend to delete useless information for phoneme recognition.

Language Model Adaptation to Specialized Domains through Selective Masking based on Genre and Topical Characteristics

Recent advances in pre-trained language modeling have facilitated significant progress across various natural language processing (NLP) tasks. Word masking during model training constitutes a pivotal component of language modeling in architectures like BERT. However, the prevalent method of word masking relies on random selection, potentially disregarding domain-specific linguistic attributes. In this article, we introduce an innovative masking approach leveraging genre and topicality information to tailor language models to specialized domains. Our method incorporates a ranking process that prioritizes words based on their significance, subsequently guiding the masking procedure. Experiments conducted using continual pre-training within the legal domain have underscored the efficacy of our approach on the LegalGLUE benchmark in the English language. Pre-trained language models and code are freely available for use.

How Important Is Tokenization in French Medical Masked Language Models?

Subword tokenization has become the prevailing standard in the field of natural language processing (NLP) over recent years, primarily due to the widespread utilization of pre-trained language models. This shift began with Byte-Pair Encoding (BPE) and was later followed by the adoption of SentencePiece and WordPiece. While subword tokenization consistently outperforms character and word-level tokenization, the precise factors contributing to its success remain unclear. Key aspects such as the optimal segmentation granularity for diverse tasks and languages, the influence of data sources on tokenizers, and the role of morphological information in Indo-European languages remain insufficiently explored. This is particularly pertinent for biomedical terminology, characterized by specific rules governing morpheme combinations. Despite the agglutinative nature of biomedical terminology, existing language models do not explicitly incorporate this knowledge, leading to inconsistent tokenization strategies for common terms. In this paper, we seek to delve into the complexities of subword tokenization in French biomedical domain across a variety of NLP tasks and pinpoint areas where further enhancements can be made. We analyze classical tokenization algorithms, including BPE and SentencePiece, and introduce an original tokenization strategy that integrates morpheme-enriched word segmentation into existing tokenization methods.

DrBenchmark: A Large Language Understanding Evaluation Benchmark for French Biomedical Domain

The biomedical domain has sparked a significant interest in the field of Natural Language Processing (NLP), which has seen substantial advancements with pre-trained language models (PLMs). However, comparing these models has proven challenging due to variations in evaluation protocols across different models. A fair solution is to aggregate diverse downstream tasks into a benchmark, allowing for the assessment of intrinsic PLMs qualities from various perspectives. Although still limited to few languages, this initiative has been undertaken in the biomedical field, notably English and Chinese. This limitation hampers the evaluation of the latest French biomedical models, as they are either assessed on a minimal number of tasks with non-standardized protocols or evaluated using general downstream tasks. To bridge this research gap and account for the unique sensitivities of French, we present the first-ever publicly available French biomedical language understanding benchmark called DrBenchmark. It encompasses 20 diversified tasks, including named-entity recognition, part-of-speech tagging, question-answering, semantic textual similarity, and classification. We evaluate 8 state-of-the-art pre-trained masked language models (MLMs) on general and biomedical-specific data, as well as English specific MLMs to assess their cross-lingual capabilities. Our experiments reveal that no single model excels across all tasks, while generalist models are sometimes still competitive.

BioMistral: A Collection of Open-Source Pretrained Large Language Models for Medical Domains

Large Language Models (LLMs) have demonstrated remarkable versatility in recent years, offering potential applications across specialized domains such as healthcare and medicine. Despite the availability of various open-source LLMs tailored for health contexts, adapting general-purpose LLMs to the medical domain presents significant challenges. In this paper, we introduce BioMistral, an open-source LLM tailored for the biomedical domain, utilizing Mistral as its foundation model and further pre-trained on PubMed Central. We conduct a comprehensive evaluation of BioMistral on a benchmark comprising 10 established medical question-answering (QA) tasks in English. We also explore lightweight models obtained through quantization and model merging approaches. Our results demonstrate BioMistral's superior performance compared to existing open-source medical models and its competitive edge against proprietary counterparts. Finally, to address the limited availability of data beyond English and to assess the multilingual generalization of medical LLMs, we automatically translated and evaluated this benchmark into 7 other languages. This marks the first large-scale multilingual evaluation of LLMs in the medical domain. Datasets, multilingual evaluation benchmarks, scripts, and all the models obtained during our experiments are freely released.

Learning to Rank Context for Named Entity Recognition Using a Synthetic Dataset

While recent pre-trained transformer-based models can perform named entity recognition (NER) with great accuracy, their limited range remains an issue when applied to long documents such as whole novels. To alleviate this issue, a solution is to retrieve relevant context at the document level. Unfortunately, the lack of supervision for such a task means one has to settle for unsupervised approaches. Instead, we propose to generate a synthetic context retrieval training dataset using Alpaca, an instructiontuned large language model (LLM). Using this dataset, we train a neural context retriever based on a BERT model that is able to find relevant context for NER. We show that our method outperforms several retrieval baselines for the NER task on an English literary dataset composed of the first chapter of 40 books.

A Zero-shot and Few-shot Study of Instruction-Finetuned Large Language Models Applied to Clinical and Biomedical Tasks

We evaluate four state-of-the-art instruction-tuned large language models (LLMs) -- ChatGPT, Flan-T5 UL2, Tk-Instruct, and Alpaca -- on a set of 13 real-world clinical and biomedical natural language processing (NLP) tasks in English, such as named-entity recognition (NER), question-answering (QA), relation extraction (RE), etc. Our overall results demonstrate that the evaluated LLMs begin to approach performance of state-of-the-art models in zero- and few-shot scenarios for most tasks, and particularly well for the QA task, even though they have never seen examples from these tasks before. However, we observed that the classification and RE tasks perform below what can be achieved with a specifically trained model for the medical field, such as PubMedBERT. Finally, we noted that no LLM outperforms all the others on all the studied tasks, with some models being better suited for certain tasks than others.

The Role of Global and Local Context in Named Entity Recognition

Pre-trained transformer-based models have recently shown great performance when applied to Named Entity Recognition (NER). As the complexity of their self-attention mechanism prevents them from processing long documents at once, these models are usually applied in a sequential fashion. Such an approach unfortunately only incorporates local context and prevents leveraging global document context in long documents such as novels, which might hinder performance. In this article, we explore the impact of global document context, and its relationships with local context. We find that correctly retrieving global document context has a greater impact on performance than only leveraging local context, prompting for further research on how to better retrieve that context.