Electron microscopy has shown to be a very powerful tool to map the chemical nature of samples at various scales down to atomic resolution. However, many samples can not be analyzed with an acceptable signal-to-noise ratio because of the radiation damage induced by the electron beam. This is particularly crucial for electron energy loss spectroscopy (EELS) which acquires spectral-spatial data and requires high beam intensity. Since scanning transmission electron microscopes (STEM) are able to acquire data cubes by scanning the electron probe over the sample and recording a spectrum for each spatial position, it is possible to design the scan pattern and to sample only specific pixels. As a consequence, partial acquisition schemes are now conceivable, provided a reconstruction of the full data cube is conducted as a post-processing step. This paper proposes two reconstruction algorithms for multi-band images acquired by STEM-EELS which exploits the spectral structure and the spatial smoothness of the image. The performance of the proposed schemes is illustrated thanks to experiments conducted on a realistic phantom dataset as well as real EELS spectrum-images.
To analyze dynamic positron emission tomography (PET) images, various generic multivariate data analysis techniques have been considered in the literature, such as principal component analysis (PCA), independent component analysis (ICA), factor analysis and nonnegative matrix factorization (NMF). Nevertheless, these conventional approaches neglect any possible nonlinear variations in the time activity curves describing the kinetic behavior of tissues with specific binding, which limits their ability to recover a reliable, understandable and interpretable description of the data. This paper proposes an alternative analysis paradigm that accounts for spatial fluctuations in the exchange rate of the tracer between a free compartment and a specifically bound ligand compartment. The method relies on the concept of linear unmixing, usually applied on the hyperspectral domain, which combines NMF with a sum-to-one constraint that ensures an exhaustive description of the mixtures. The spatial variability of the signature corresponding to the specific binding tissue is explicitly modeled through a perturbed component. The performance of the method is assessed on both synthetic and real data and is shown to compete favorably when compared to other conventional analysis methods. The proposed method improved both factor estimation and proportions extraction for specific binding. Modeling the variability of the specific binding factor has a strong potential impact for dynamic PET image analysis.
Within a supervised classification framework, labeled data are used to learn classifier parameters. Prior to that, it is generally required to perform dimensionality reduction via feature extraction. These preprocessing steps have motivated numerous research works aiming at recovering latent variables in an unsupervised context. This paper proposes a unified framework to perform classification and low-level modeling jointly. The main objective is to use the estimated latent variables as features for classification and to incorporate simultaneously supervised information to help latent variable extraction. The proposed hierarchical Bayesian model is divided into three stages: a first low-level modeling stage to estimate latent variables, a second stage clustering these features into statistically homogeneous groups and a last classification stage exploiting the (possibly badly) labeled data. Performance of the model is assessed in the specific context of hyperspectral image interpretation, unifying two standard analysis techniques, namely unmixing and classification.
Principal component analysis (PCA) is very popular to perform dimension reduction. The selection of the number of significant components is essential but often based on some practical heuristics depending on the application. Only few works have proposed a probabilistic approach able to infer the number of significant components. To this purpose, this paper introduces a Bayesian nonparametric principal component analysis (BNP-PCA). The proposed model projects observations onto a random orthogonal basis which is assigned a prior distribution defined on the Stiefel manifold. The prior on factor scores involves an Indian buffet process to model the uncertainty related to the number of components. The parameters of interest as well as the nuisance parameters are finally inferred within a fully Bayesian framework via Monte Carlo sampling. A study of the (in-)consistence of the marginal maximum a posteriori estimator of the latent dimension is carried out. A new estimator of the subspace dimension is proposed. Moreover, for sake of statistical significance, a Kolmogorov-Smirnov test based on the posterior distribution of the principal components is used to refine this estimate. The behaviour of the algorithm is first studied on various synthetic examples. Finally, the proposed BNP dimension reduction approach is shown to be easily yet efficiently coupled with clustering or latent factor models within a unique framework.
Piecewise constant denoising can be solved either by deterministic optimization approaches, based on the Potts model, or by stochastic Bayesian procedures. The former lead to low computational time but require the selection of a regularization parameter, whose value significantly impacts the achieved solution, and whose automated selection remains an involved and challenging problem. Conversely, fully Bayesian formalisms encapsulate the regularization parameter selection into hierarchical models, at the price of high computational costs. This contribution proposes an operational strategy that combines hierarchical Bayesian and Potts model formulations, with the double aim of automatically tuning the regularization parameter and of maintaining computational effciency. The proposed procedure relies on formally connecting a Bayesian framework to a l2-Potts functional. Behaviors and performance for the proposed piecewise constant denoising and regularization parameter tuning techniques are studied qualitatively and assessed quantitatively, and shown to compare favorably against those of a fully Bayesian hierarchical procedure, both in accuracy and in computational load.
Archetypal scenarios for change detection generally consider two images acquired through sensors of the same modality. However, in some specific cases such as emergency situations, the only images available may be those acquired through different kinds of sensors. More precisely, this paper addresses the problem of detecting changes between two multi-band optical images characterized by different spatial and spectral resolutions. This sensor dissimilarity introduces additional issues in the context of operational change detection. To alleviate these issues, classical change detection methods are applied after independent preprocessing steps (e.g., resampling) used to get the same spatial and spectral resolutions for the pair of observed images. Nevertheless, these preprocessing steps tend to throw away relevant information. Conversely, in this paper, we propose a method that more effectively uses the available information by modeling the two observed images as spatial and spectral versions of two (unobserved) latent images characterized by the same high spatial and high spectral resolutions. As they cover the same scene, these latent images are expected to be globally similar except for possible changes in sparse spatial locations. Thus, the change detection task is envisioned through a robust multi-band image fusion method which enforces the differences between the estimated latent images to be spatially sparse. This robust fusion problem is formulated as an inverse problem which is iteratively solved using an efficient block-coordinate descent algorithm. The proposed method is applied to real panchormatic/multispectral and hyperspectral images with simulated realistic changes. A comparison with state-of-the-art change detection methods evidences the accuracy of the proposed strategy.
Change detection is one of the most challenging issues when analyzing remotely sensed images. Comparing several multi-date images acquired through the same kind of sensor is the most common scenario. Conversely, designing robust, flexible and scalable algorithms for change detection becomes even more challenging when the images have been acquired by two different kinds of sensors. This situation arises in case of emergency under critical constraints. This paper presents, to the best of authors' knowledge, the first strategy to deal with optical images characterized by dissimilar spatial and spectral resolutions. Typical considered scenarios include change detection between panchromatic or multispectral and hyperspectral images. The proposed strategy consists of a 3-step procedure: i) inferring a high spatial and spectral resolution image by fusion of the two observed images characterized one by a low spatial resolution and the other by a low spectral resolution, ii) predicting two images with respectively the same spatial and spectral resolutions as the observed images by degradation of the fused one and iii) implementing a decision rule to each pair of observed and predicted images characterized by the same spatial and spectral resolutions to identify changes. The performance of the proposed framework is evaluated on real images with simulated realistic changes.
Texture segmentation constitutes a standard image processing task, crucial to many applications. The present contribution focuses on the particular subset of scale-free textures and its originality resides in the combination of three key ingredients: First, texture characterization relies on the concept of local regularity ; Second, estimation of local regularity is based on new multiscale quantities referred to as wavelet leaders ; Third, segmentation from local regularity faces a fundamental bias variance trade-off: In nature, local regularity estimation shows high variability that impairs the detection of changes, while a posteriori smoothing of regularity estimates precludes from locating correctly changes. Instead, the present contribution proposes several variational problem formulations based on total variation and proximal resolutions that effectively circumvent this trade-off. Estimation and segmentation performance for the proposed procedures are quantified and compared on synthetic as well as on real-world textures.
Hyperspectral unmixing is aimed at identifying the reference spectral signatures composing an hyperspectral image and their relative abundance fractions in each pixel. In practice, the identified signatures may vary spectrally from an image to another due to varying acquisition conditions, thus inducing possibly significant estimation errors. Against this background, hyperspectral unmixing of several images acquired over the same area is of considerable interest. Indeed, such an analysis enables the endmembers of the scene to be tracked and the corresponding endmember variability to be characterized. Sequential endmember estimation from a set of hyperspectral images is expected to provide improved performance when compared to methods analyzing the images independently. However, the significant size of hyperspectral data precludes the use of batch procedures to jointly estimate the mixture parameters of a sequence of hyperspectral images. Provided that each elementary component is present in at least one image of the sequence, we propose to perform an online hyperspectral unmixing accounting for temporal endmember variability. The online hyperspectral unmixing is formulated as a two-stage stochastic program, which can be solved using a stochastic approximation. The performance of the proposed method is evaluated on synthetic and real data. A comparison with independent unmixing algorithms finally illustrates the interest of the proposed strategy.
This paper addresses the problem of single image super-resolution (SR), which consists of recovering a high resolution image from its blurred, decimated and noisy version. The existing algorithms for single image SR use different strategies to handle the decimation and blurring operators. In addition to the traditional first-order gradient methods, recent techniques investigate splitting-based methods dividing the SR problem into up-sampling and deconvolution steps that can be easily solved. Instead of following this splitting strategy, we propose to deal with the decimation and blurring operators simultaneously by taking advantage of their particular properties in the frequency domain, leading to a new fast SR approach. Specifically, an analytical solution can be obtained and implemented efficiently for the Gaussian prior or any other regularization that can be formulated into an $\ell_2$-regularized quadratic model, i.e., an $\ell_2$-$\ell_2$ optimization problem. Furthermore, the flexibility of the proposed SR scheme is shown through the use of various priors/regularizations, ranging from generic image priors to learning-based approaches. In the case of non-Gaussian priors, we show how the analytical solution derived from the Gaussian case can be embedded intotraditional splitting frameworks, allowing the computation cost of existing algorithms to be decreased significantly. Simulation results conducted on several images with different priors illustrate the effectiveness of our fast SR approach compared with the existing techniques.