Get our free extension to see links to code for papers anywhere online!

Chrome logo  Add to Chrome

Firefox logo Add to Firefox

Construction and Usage of a Human Body Common Coordinate Framework Comprising Clinical, Semantic, and Spatial Ontologies


Jul 28, 2020
Katy Börner, Ellen M. Quardokus, Bruce W. Herr II, Leonard E. Cross, Elizabeth G. Record, Yingnan Ju, Andreas D. Bueckle, James P. Sluka, Jonathan C. Silverstein, Kristen M. Browne, Sanjay Jain, Clive H. Wasserfall, Marda L. Jorgensen, Jeffrey M. Spraggins, Nathan H. Patterson, Mark A. Musen, Griffin M. Weber

Add code

* 24 pages with SI, 6 figures, 5 tables 

   Access Paper or Ask Questions

  • Share via Twitter
  • Share via Facebook
  • Share via LinkedIn
  • Share via Whatsapp
  • Share via Messenger
  • Share via Email

An Empirical Meta-analysis of the Life Sciences (Linked?) Open Data on the Web


Jun 07, 2020
Maulik R. Kamdar, Mark A. Musen

Add code

* Under Review at Nature Scientific Data 

   Access Paper or Ask Questions

  • Share via Twitter
  • Share via Facebook
  • Share via LinkedIn
  • Share via Whatsapp
  • Share via Messenger
  • Share via Email

Use of OWL and Semantic Web Technologies at Pinterest


Jul 03, 2019
Rafael S. Gonçalves, Matthew Horridge, Rui Li, Yu Liu, Mark A. Musen, Csongor I. Nyulas, Evelyn Obamos, Dhananjay Shrouty, David Temple

Add code


   Access Paper or Ask Questions

  • Share via Twitter
  • Share via Facebook
  • Share via LinkedIn
  • Share via Whatsapp
  • Share via Messenger
  • Share via Email

Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases


Mar 21, 2019
Marcos MartĂ­nez-Romero, Martin J. O'Connor, Attila L. Egyedi, Debra Willrett, Josef Hardi, John Graybeal, Mark A. Musen

Add code


   Access Paper or Ask Questions

  • Share via Twitter
  • Share via Facebook
  • Share via LinkedIn
  • Share via Whatsapp
  • Share via Messenger
  • Share via Email

Aligning Biomedical Metadata with Ontologies Using Clustering and Embeddings


Mar 19, 2019
Rafael S. Gonçalves, Maulik R. Kamdar, Mark A. Musen

Add code


   Access Paper or Ask Questions

  • Share via Twitter
  • Share via Facebook
  • Share via LinkedIn
  • Share via Whatsapp
  • Share via Messenger
  • Share via Email

WebProtégé: A Cloud-Based Ontology Editor


Mar 06, 2019
Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen

Add code


   Access Paper or Ask Questions

  • Share via Twitter
  • Share via Facebook
  • Share via LinkedIn
  • Share via Whatsapp
  • Share via Messenger
  • Share via Email

The Variable Quality of Metadata About Biological Samples Used in Biomedical Experiments


Aug 17, 2018
Rafael S. Gonçalves, Mark A. Musen

Add code

* arXiv admin note: substantial text overlap with arXiv:1708.01286 

   Access Paper or Ask Questions

  • Share via Twitter
  • Share via Facebook
  • Share via LinkedIn
  • Share via Whatsapp
  • Share via Messenger
  • Share via Email

NCBO Ontology Recommender 2.0: An Enhanced Approach for Biomedical Ontology Recommendation


May 25, 2017
Marcos Martinez-Romero, Clement Jonquet, Martin J. O'Connor, John Graybeal, Alejandro Pazos, Mark A. Musen

Add code

* Journal of Biomedical Semantics 8 (2017) 1-22 
* 29 pages, 8 figures, 11 tables 

   Access Paper or Ask Questions

  • Share via Twitter
  • Share via Facebook
  • Share via LinkedIn
  • Share via Whatsapp
  • Share via Messenger
  • Share via Email

Discovering Beaten Paths in Collaborative Ontology-Engineering Projects using Markov Chains


Feb 29, 2016
Simon Walk, Philipp Singer, Markus Strohmaier, Tania Tudorache, Mark A. Musen, Natalya F. Noy

Add code

* Published in the Journal of Biomedical Informatics 

   Access Paper or Ask Questions

  • Share via Twitter
  • Share via Facebook
  • Share via LinkedIn
  • Share via Whatsapp
  • Share via Messenger
  • Share via Email

Graph-Grammar Assistance for Automated Generation of Influence Diagrams


Mar 06, 2013
John W. Egar, Mark A. Musen

Add code

* Appears in Proceedings of the Ninth Conference on Uncertainty in Artificial Intelligence (UAI1993) 

   Access Paper or Ask Questions

  • Share via Twitter
  • Share via Facebook
  • Share via LinkedIn
  • Share via Whatsapp
  • Share via Messenger
  • Share via Email