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Construction and Usage of a Human Body Common Coordinate Framework Comprising Clinical, Semantic, and Spatial Ontologies

Jul 28, 2020
Katy Börner, Ellen M. Quardokus, Bruce W. Herr II, Leonard E. Cross, Elizabeth G. Record, Yingnan Ju, Andreas D. Bueckle, James P. Sluka, Jonathan C. Silverstein, Kristen M. Browne, Sanjay Jain, Clive H. Wasserfall, Marda L. Jorgensen, Jeffrey M. Spraggins, Nathan H. Patterson, Mark A. Musen, Griffin M. Weber

* 24 pages with SI, 6 figures, 5 tables 

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An Empirical Meta-analysis of the Life Sciences (Linked?) Open Data on the Web

Jun 07, 2020
Maulik R. Kamdar, Mark A. Musen

* Under Review at Nature Scientific Data 

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Use of OWL and Semantic Web Technologies at Pinterest

Jul 03, 2019
Rafael S. Gonçalves, Matthew Horridge, Rui Li, Yu Liu, Mark A. Musen, Csongor I. Nyulas, Evelyn Obamos, Dhananjay Shrouty, David Temple


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Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases

Mar 21, 2019
Marcos MartĂ­nez-Romero, Martin J. O'Connor, Attila L. Egyedi, Debra Willrett, Josef Hardi, John Graybeal, Mark A. Musen


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Aligning Biomedical Metadata with Ontologies Using Clustering and Embeddings

Mar 19, 2019
Rafael S. Gonçalves, Maulik R. Kamdar, Mark A. Musen


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WebProtégé: A Cloud-Based Ontology Editor

Mar 06, 2019
Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen


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The Variable Quality of Metadata About Biological Samples Used in Biomedical Experiments

Aug 17, 2018
Rafael S. Gonçalves, Mark A. Musen

* arXiv admin note: substantial text overlap with arXiv:1708.01286 

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NCBO Ontology Recommender 2.0: An Enhanced Approach for Biomedical Ontology Recommendation

May 25, 2017
Marcos Martinez-Romero, Clement Jonquet, Martin J. O'Connor, John Graybeal, Alejandro Pazos, Mark A. Musen

* Journal of Biomedical Semantics 8 (2017) 1-22 
* 29 pages, 8 figures, 11 tables 

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Discovering Beaten Paths in Collaborative Ontology-Engineering Projects using Markov Chains

Feb 29, 2016
Simon Walk, Philipp Singer, Markus Strohmaier, Tania Tudorache, Mark A. Musen, Natalya F. Noy

* Published in the Journal of Biomedical Informatics 

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Graph-Grammar Assistance for Automated Generation of Influence Diagrams

Mar 06, 2013
John W. Egar, Mark A. Musen

* Appears in Proceedings of the Ninth Conference on Uncertainty in Artificial Intelligence (UAI1993) 

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