Get our free extension to see links to code for papers anywhere online!

Chrome logo Add to Chrome

Firefox logo Add to Firefox

Picture for Mark A. Musen

Construction and Usage of a Human Body Common Coordinate Framework Comprising Clinical, Semantic, and Spatial Ontologies


Jul 28, 2020
Katy Börner, Ellen M. Quardokus, Bruce W. Herr II, Leonard E. Cross, Elizabeth G. Record, Yingnan Ju, Andreas D. Bueckle, James P. Sluka, Jonathan C. Silverstein, Kristen M. Browne, Sanjay Jain, Clive H. Wasserfall, Marda L. Jorgensen, Jeffrey M. Spraggins, Nathan H. Patterson, Mark A. Musen, Griffin M. Weber

* 24 pages with SI, 6 figures, 5 tables 

  Access Paper or Ask Questions

An Empirical Meta-analysis of the Life Sciences (Linked?) Open Data on the Web


Jun 07, 2020
Maulik R. Kamdar, Mark A. Musen

* Under Review at Nature Scientific Data 

  Access Paper or Ask Questions

Use of OWL and Semantic Web Technologies at Pinterest


Jul 03, 2019
Rafael S. Gonçalves, Matthew Horridge, Rui Li, Yu Liu, Mark A. Musen, Csongor I. Nyulas, Evelyn Obamos, Dhananjay Shrouty, David Temple


  Access Paper or Ask Questions

Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases


Mar 21, 2019
Marcos MartĂ­nez-Romero, Martin J. O'Connor, Attila L. Egyedi, Debra Willrett, Josef Hardi, John Graybeal, Mark A. Musen


  Access Paper or Ask Questions

Aligning Biomedical Metadata with Ontologies Using Clustering and Embeddings


Mar 19, 2019
Rafael S. Gonçalves, Maulik R. Kamdar, Mark A. Musen


  Access Paper or Ask Questions

WebProtégé: A Cloud-Based Ontology Editor


Mar 06, 2019
Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen


  Access Paper or Ask Questions

The Variable Quality of Metadata About Biological Samples Used in Biomedical Experiments


Aug 17, 2018
Rafael S. Gonçalves, Mark A. Musen

* arXiv admin note: substantial text overlap with arXiv:1708.01286 

  Access Paper or Ask Questions

NCBO Ontology Recommender 2.0: An Enhanced Approach for Biomedical Ontology Recommendation


May 25, 2017
Marcos Martinez-Romero, Clement Jonquet, Martin J. O'Connor, John Graybeal, Alejandro Pazos, Mark A. Musen

* Journal of Biomedical Semantics 8 (2017) 1-22 
* 29 pages, 8 figures, 11 tables 

  Access Paper or Ask Questions

Discovering Beaten Paths in Collaborative Ontology-Engineering Projects using Markov Chains


Feb 29, 2016
Simon Walk, Philipp Singer, Markus Strohmaier, Tania Tudorache, Mark A. Musen, Natalya F. Noy

* Published in the Journal of Biomedical Informatics 

  Access Paper or Ask Questions

Graph-Grammar Assistance for Automated Generation of Influence Diagrams


Mar 06, 2013
John W. Egar, Mark A. Musen

* Appears in Proceedings of the Ninth Conference on Uncertainty in Artificial Intelligence (UAI1993) 

  Access Paper or Ask Questions