Ensemble Methods for Multi-Organ Segmentation in CT Series

In the medical images field, semantic segmentation is one of the most important, yet difficult and time-consuming tasks to be performed by physicians. Thanks to the recent advancement in the Deep Learning models regarding Computer Vision, the promise to automate this kind of task is getting more and more realistic. However, many problems are still to be solved, like the scarce availability of data and the difficulty to extend the efficiency of highly specialised models to general scenarios. Organs at risk segmentation for radiotherapy treatment planning falls in this category, as the limited data available negatively affects the possibility to develop general-purpose models; in this work, we focus on the possibility to solve this problem by presenting three types of ensembles of single-organ models able to produce multi-organ masks exploiting the different specialisations of their components. The results obtained are promising and prove that this is a possible solution to finding efficient multi-organ segmentation methods.

Comparing Adversarial and Supervised Learning for Organs at Risk Segmentation in CT images

Organ at Risk (OAR) segmentation from CT scans is a key component of the radiotherapy treatment workflow. In recent years, deep learning techniques have shown remarkable potential in automating this process. In this paper, we investigate the performance of Generative Adversarial Networks (GANs) compared to supervised learning approaches for segmenting OARs from CT images. We propose three GAN-based models with identical generator architectures but different discriminator networks. These models are compared with well-established CNN models, such as SE-ResUnet and DeepLabV3, using the StructSeg dataset, which consists of 50 annotated CT scans containing contours of six OARs. Our work aims to provide insight into the advantages and disadvantages of adversarial training in the context of OAR segmentation. The results are very promising and show that the proposed GAN-based approaches are similar or superior to their CNN-based counterparts, particularly when segmenting more challenging target organs.

Chest X-Rays Image Classification from beta-Variational Autoencoders Latent Features

Chest X-Ray (CXR) is one of the most common diagnostic techniques used in everyday clinical practice all around the world. We hereby present a work which intends to investigate and analyse the use of Deep Learning (DL) techniques to extract information from such images and allow to classify them, trying to keep our methodology as general as possible and possibly also usable in a real world scenario without much effort, in the future. To move in this direction, we trained several beta-Variational Autoencoder (beta-VAE) models on the CheXpert dataset, one of the largest publicly available collection of labeled CXR images; from these models, latent features have been extracted and used to train other Machine Learning models, able to classify the original images from the features extracted by the beta-VAE. Lastly, tree-based models have been combined together in ensemblings to improve the results without the necessity of further training or models engineering. Expecting some drop in pure performance with the respect to state of the art classification specific models, we obtained encouraging results, which show the viability of our approach and the usability of the high level features extracted by the autoencoders for classification tasks.