BodyGPS: Anatomical Positioning System

We introduce a new type of foundational model for parsing human anatomy in medical images that works for different modalities. It supports supervised or unsupervised training and can perform matching, registration, classification, or segmentation with or without user interaction. We achieve this by training a neural network estimator that maps query locations to atlas coordinates via regression. Efficiency is improved by sparsely sampling the input, enabling response times of less than 1 ms without additional accelerator hardware. We demonstrate the utility of the algorithm in both CT and MRI modalities.

Evaluating unsupervised contrastive learning framework for MRI sequences classification

The automatic identification of Magnetic Resonance Imaging (MRI) sequences can streamline clinical workflows by reducing the time radiologists spend manually sorting and identifying sequences, thereby enabling faster diagnosis and treatment planning for patients. However, the lack of standardization in the parameters of MRI scans poses challenges for automated systems and complicates the generation and utilization of datasets for machine learning research. To address this issue, we propose a system for MRI sequence identification using an unsupervised contrastive deep learning framework. By training a convolutional neural network based on the ResNet-18 architecture, our system classifies nine common MRI sequence types as a 9-class classification problem. The network was trained using an in-house internal dataset and validated on several public datasets, including BraTS, ADNI, Fused Radiology-Pathology Prostate Dataset, the Breast Cancer Dataset (ACRIN), among others, encompassing diverse acquisition protocols and requiring only 2D slices for training. Our system achieves a classification accuracy of over 0.95 across the nine most common MRI sequence types.