Ptychopy: GPU framework for ptychographic data analysis

X-ray ptychography imaging at synchrotron facilities like the Advanced Photon Source (APS) involves controlling instrument hardwares to collect a set of diffraction patterns from overlapping coherent illumination spots on extended samples, managing data storage, reconstructing ptychographic images from acquired diffraction patterns, and providing the visualization of results and feedback. In addition to the complicated workflow, ptychography instrument could produce up to several TB's of data per second that is needed to be processed in real time. This brings up the need to develop a high performance, robust and user friendly processing software package for ptychographic data analysis. In this paper we present a software framework which provides functionality of visualization, work flow control, and data reconstruction. To accelerate the computation and large datasets process, the data reconstruction part is implemented with three algorithms, ePIE, DM and LSQML using CUDA-C on GPU.

Accelerating Laue Depth Reconstruction Algorithm with CUDA

The Laue diffraction microscopy experiment uses the polychromatic Laue micro-diffraction technique to examine the structure of materials with sub-micron spatial resolution in all three dimensions. During this experiment, local crystallographic orientations, orientation gradients and strains are measured as properties which will be recorded in HDF5 image format. The recorded images will be processed with a depth reconstruction algorithm for future data analysis. But the current depth reconstruction algorithm consumes considerable processing time and might take up to 2 weeks for reconstructing data collected from one single experiment. To improve the depth reconstruction computation speed, we propose a scalable GPU program solution on the depth reconstruction problem in this paper. The test result shows that the running time would be 10 to 20 times faster than the prior CPU design for various size of input data.