Simulation-Driven Deep Learning Framework for Raman Spectral Denoising Under Fluorescence-Dominant Conditions

Raman spectroscopy enables non-destructive, label-free molecular analysis with high specificity, making it a powerful tool for biomedical diagnostics. However, its application to biological tissues is challenged by inherently weak Raman scattering and strong fluorescence background, which significantly degrade signal quality. In this study, we present a simulation-driven denoising framework that combines a statistically grounded noise model with deep learning to enhance Raman spectra acquired under fluorescence-dominated conditions. We comprehensively modeled major noise sources. Based on this model, we generated biologically realistic Raman spectra and used them to train a cascaded deep neural network designed to jointly suppress stochastic detector noise and fluorescence baseline interference. To evaluate the performance of our approach, we simulated human skin spectra derived from real experimental data as a validation case study. Our results demonstrate the potential of physics-informed learning to improve spectral quality and enable faster, more accurate Raman-based tissue analysis.

Single color virtual H&E staining with In-and-Out Net

Virtual staining streamlines traditional staining procedures by digitally generating stained images from unstained or differently stained images. While conventional staining methods involve time-consuming chemical processes, virtual staining offers an efficient and low infrastructure alternative. Leveraging microscopy-based techniques, such as confocal microscopy, researchers can expedite tissue analysis without the need for physical sectioning. However, interpreting grayscale or pseudo-color microscopic images remains a challenge for pathologists and surgeons accustomed to traditional histologically stained images. To fill this gap, various studies explore digitally simulating staining to mimic targeted histological stains. This paper introduces a novel network, In-and-Out Net, specifically designed for virtual staining tasks. Based on Generative Adversarial Networks (GAN), our model efficiently transforms Reflectance Confocal Microscopy (RCM) images into Hematoxylin and Eosin (H&E) stained images. We enhance nuclei contrast in RCM images using aluminum chloride preprocessing for skin tissues. Training the model with virtual H\&E labels featuring two fluorescence channels eliminates the need for image registration and provides pixel-level ground truth. Our contributions include proposing an optimal training strategy, conducting a comparative analysis demonstrating state-of-the-art performance, validating the model through an ablation study, and collecting perfectly matched input and ground truth images without registration. In-and-Out Net showcases promising results, offering a valuable tool for virtual staining tasks and advancing the field of histological image analysis.