Device Passport: Enabling Spatio-Temporal Pretrained Models to Generalize Across Input Layouts

New device layouts pose a challenging modeling problem due to the lack of large datasets for each specific layout. Biosignal foundation models offer a plausible solution if they are able to generalize to new layouts effectively. To improve cross-layout transfer, we study how different channel embedding techniques behave when pretraining layouts differ substantially from the downstream decoding layout. We propose Device Passport, a new channel embedding technique that learns experts and mixture models that take each channel's functional activity and metadata as input. This contrasts with prior embedding methods, which typically use only functional information or only metadata to look up learned or fixed positional embeddings. Across controlled subset-transfer experiments and realistic transfer to ear-EEG, Device Passport is competitive overall and improves over the strongest learned baseline in the layout-transfer regimes that motivate this work. These results suggest that channel embedding design is a key consideration when reusing large-scale pretrained biosignal models on new devices.

CPEP: Contrastive Pose-EMG Pre-training Enhances Gesture Generalization on EMG Signals

Hand gesture classification using high-quality structured data such as videos, images, and hand skeletons is a well-explored problem in computer vision. Leveraging low-power, cost-effective biosignals, e.g. surface electromyography (sEMG), allows for continuous gesture prediction on wearables. In this paper, we demonstrate that learning representations from weak-modality data that are aligned with those from structured, high-quality data can improve representation quality and enables zero-shot classification. Specifically, we propose a Contrastive Pose-EMG Pre-training (CPEP) framework to align EMG and pose representations, where we learn an EMG encoder that produces high-quality and pose-informative representations. We assess the gesture classification performance of our model through linear probing and zero-shot setups. Our model outperforms emg2pose benchmark models by up to 21% on in-distribution gesture classification and 72% on unseen (out-of-distribution) gesture classification.

Frequency-Aware Masked Autoencoders for Multimodal Pretraining on Biosignals

Leveraging multimodal information from biosignals is vital for building a comprehensive representation of people's physical and mental states. However, multimodal biosignals often exhibit substantial distributional shifts between pretraining and inference datasets, stemming from changes in task specification or variations in modality compositions. To achieve effective pretraining in the presence of potential distributional shifts, we propose a frequency-aware masked autoencoder ($\texttt{bio}$FAME) that learns to parameterize the representation of biosignals in the frequency space. $\texttt{bio}$FAME incorporates a frequency-aware transformer, which leverages a fixed-size Fourier-based operator for global token mixing, independent of the length and sampling rate of inputs. To maintain the frequency components within each input channel, we further employ a frequency-maintain pretraining strategy that performs masked autoencoding in the latent space. The resulting architecture effectively utilizes multimodal information during pretraining, and can be seamlessly adapted to diverse tasks and modalities at test time, regardless of input size and order. We evaluated our approach on a diverse set of transfer experiments on unimodal time series, achieving an average of $\uparrow$5.5% improvement in classification accuracy over the previous state-of-the-art. Furthermore, we demonstrated that our architecture is robust in modality mismatch scenarios, including unpredicted modality dropout or substitution, proving its practical utility in real-world applications. Code will be available soon.