Statistical whitening of neural populations with gain-modulating interneurons

Statistical whitening transformations play a fundamental role in many computational systems, and may also play an important role in biological sensory systems. Individual neurons appear to rapidly and reversibly alter their input-output gains, approximately normalizing the variance of their responses. Populations of neurons appear to regulate their joint responses, reducing correlations between neural activities. It is natural to see whitening as the objective that guides these behaviors, but the mechanism for such joint changes is unknown, and direct adjustment of synaptic interactions would seem to be both too slow, and insufficiently reversible. Motivated by the extensive neuroscience literature on rapid gain modulation, we propose a recurrent network architecture in which joint whitening is achieved through modulation of gains within the circuit. Specifically, we derive an online statistical whitening algorithm that regulates the joint second-order statistics of a multi-dimensional input by adjusting the marginal variances of an overcomplete set of interneuron projections. The gains of these interneurons are adjusted individually, using only local signals, and feed back onto the primary neurons. The network converges to a state in which the responses of the primary neurons are whitened. We demonstrate through simulations that the behavior of the network is robust to poor conditioning or noise when the gains are sign-constrained, and can be generalized to achieve a form of local whitening in convolutional populations, such as those found throughout the visual or auditory system.

Epistemic AI platform accelerates innovation by connecting biomedical knowledge

Epistemic AI accelerates biomedical discovery by finding hidden connections in the network of biomedical knowledge. The Epistemic AI web-based software platform embodies the concept of knowledge mapping, an interactive process that relies on a knowledge graph in combination with natural language processing (NLP), information retrieval, relevance feedback, and network analysis. Knowledge mapping reduces information overload, prevents costly mistakes, and minimizes missed opportunities in the research process. The platform combines state-of-the-art methods for information extraction with machine learning, artificial intelligence and network analysis. Starting from a single biological entity, such as a gene or disease, users may: a) construct a map of connections to that entity, b) map an entire domain of interest, and c) gain insight into large biological networks of knowledge. Knowledge maps provide clarity and organization, simplifying the day-to-day research processes.

Time-Series Analysis via Low-Rank Matrix Factorization Applied to Infant-Sleep Data

We propose a nonparametric model for time series with missing data based on low-rank matrix factorization. The model expresses each instance in a set of time series as a linear combination of a small number of shared basis functions. Constraining the functions and the corresponding coefficients to be nonnegative yields an interpretable low-dimensional representation of the data. A time-smoothing regularization term ensures that the model captures meaningful trends in the data, instead of overfitting short-term fluctuations. The low-dimensional representation makes it possible to detect outliers and cluster the time series according to the interpretable features extracted by the model, and also to perform forecasting via kernel regression. We apply our methodology to a large real-world dataset of infant-sleep data gathered by caregivers with a mobile-phone app. Our analysis automatically extracts daily-sleep patterns consistent with the existing literature. This allows us to compute sleep-development trends for the cohort, which characterize the emergence of circadian sleep and different napping habits. We apply our methodology to detect anomalous individuals, to cluster the cohort into groups with different sleeping tendencies, and to obtain improved predictions of future sleep behavior.

ORGaNICs: A Theory of Working Memory in Brains and Machines

Working memory is a cognitive process that is responsible for temporarily holding and manipulating information. Most of the empirical neuroscience research on working memory has focused on measuring sustained activity in prefrontal cortex (PFC) and/or parietal cortex during simple delayed-response tasks, and most of the models of working memory have been based on neural integrators. But working memory means much more than just holding a piece of information online. We describe a new theory of working memory, based on a recurrent neural circuit that we call ORGaNICs (Oscillatory Recurrent GAted Neural Integrator Circuits). ORGaNICs are a variety of Long Short Term Memory units (LSTMs), imported from machine learning and artificial intelligence. ORGaNICs can be used to explain the complex dynamics of delay-period activity in prefrontal cortex (PFC) during a working memory task. The theory is analytically tractable so that we can characterize the dynamics, and the theory provides a means for reading out information from the dynamically varying responses at any point in time, in spite of the complex dynamics. ORGaNICs can be implemented with a biophysical (electrical circuit) model of pyramidal cells, combined with shunting inhibition via a thalamocortical loop. Although introduced as a computational theory of working memory, ORGaNICs are also applicable to models of sensory processing, motor preparation and motor control. ORGaNICs offer computational advantages compared to other varieties of LSTMs that are commonly used in AI applications. Consequently, ORGaNICs are a framework for canonical computation in brains and machines.