Siamese Learning-based Monarch Butterfly Localization

A new GPS-less, daily localization method is proposed with deep learning sensor fusion that uses daylight intensity and temperature sensor data for Monarch butterfly tracking. Prior methods suffer from the location-independent day length during the equinox, resulting in high localization errors around that date. This work proposes a new Siamese learning-based localization model that improves the accuracy and reduces the bias of daily Monarch butterfly localization using light and temperature measurements. To train and test the proposed algorithm, we use $5658$ daily measurement records collected through a data measurement campaign involving 306 volunteers across the U.S., Canada, and Mexico from 2018 to 2020. This model achieves a mean absolute error of $1.416^\circ$ in latitude and $0.393^\circ$ in longitude coordinates outperforming the prior method.

Variational Mixtures of ODEs for Inferring Cellular Gene Expression Dynamics

A key problem in computational biology is discovering the gene expression changes that regulate cell fate transitions, in which one cell type turns into another. However, each individual cell cannot be tracked longitudinally, and cells at the same point in real time may be at different stages of the transition process. This can be viewed as a problem of learning the behavior of a dynamical system from observations whose times are unknown. Additionally, a single progenitor cell type often bifurcates into multiple child cell types, further complicating the problem of modeling the dynamics. To address this problem, we developed an approach called variational mixtures of ordinary differential equations. By using a simple family of ODEs informed by the biochemistry of gene expression to constrain the likelihood of a deep generative model, we can simultaneously infer the latent time and latent state of each cell and predict its future gene expression state. The model can be interpreted as a mixture of ODEs whose parameters vary continuously across a latent space of cell states. Our approach dramatically improves data fit, latent time inference, and future cell state estimation of single-cell gene expression data compared to previous approaches.

Millimeter-Scale Ultra-Low-Power Imaging System for Intelligent Edge Monitoring

Millimeter-scale embedded sensing systems have unique advantages over larger devices as they are able to capture, analyze, store, and transmit data at the source while being unobtrusive and covert. However, area-constrained systems pose several challenges, including a tight energy budget and peak power, limited data storage, costly wireless communication, and physical integration at a miniature scale. This paper proposes a novel 6.7$\times$7$\times$5mm imaging system with deep-learning and image processing capabilities for intelligent edge applications, and is demonstrated in a home-surveillance scenario. The system is implemented by vertically stacking custom ultra-low-power (ULP) ICs and uses techniques such as dynamic behavior-specific power management, hierarchical event detection, and a combination of data compression methods. It demonstrates a new image-correcting neural network that compensates for non-idealities caused by a mm-scale lens and ULP front-end. The system can store 74 frames or offload data wirelessly, consuming 49.6$\mu$W on average for an expected battery lifetime of 7 days.

Migrating Monarch Butterfly Localization Using Multi-Sensor Fusion Neural Networks

Details of Monarch butterfly migration from the U.S. to Mexico remain a mystery due to lack of a proper localization technology to accurately localize and track butterfly migration. In this paper, we propose a deep learning based butterfly localization algorithm that can estimate a butterfly's daily location by analyzing a light and temperature sensor data log continuously obtained from an ultra-low power, mm-scale sensor attached to the butterfly. To train and test the proposed neural network based multi-sensor fusion localization algorithm, we collected over 1500 days of real world sensor measurement data with 82 volunteers all over the U.S. The proposed algorithm exhibits a mean absolute error of <1.5 degree in latitude and <0.5 degree in longitude Earth coordinate, satisfying our target goal for the Monarch butterfly migration study.

Neural Cache: Bit-Serial In-Cache Acceleration of Deep Neural Networks

This paper presents the Neural Cache architecture, which re-purposes cache structures to transform them into massively parallel compute units capable of running inferences for Deep Neural Networks. Techniques to do in-situ arithmetic in SRAM arrays, create efficient data mapping and reducing data movement are proposed. The Neural Cache architecture is capable of fully executing convolutional, fully connected, and pooling layers in-cache. The proposed architecture also supports quantization in-cache. Our experimental results show that the proposed architecture can improve inference latency by 18.3x over state-of-art multi-core CPU (Xeon E5), 7.7x over server class GPU (Titan Xp), for Inception v3 model. Neural Cache improves inference throughput by 12.4x over CPU (2.2x over GPU), while reducing power consumption by 50% over CPU (53% over GPU).